Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,508,626 – 4,508,719 |
Length | 93 |
Max. P | 0.905961 |
Location | 4,508,626 – 4,508,719 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 75.07 |
Mean single sequence MFE | -28.37 |
Consensus MFE | -13.33 |
Energy contribution | -13.88 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -2.17 |
Structure conservation index | 0.47 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4508626 93 - 20766785 ACCGCCAGUGGAACGCAAUCCACACGGAAGCCGGCUGAUAGUCUGGCCAGCGGCAGCACCACUGCCAAUGGCACCACAG---------CCACCACAUUGCCA ...((..((((...((..(((....))).)).(((((........((((..(((((.....)))))..))))....)))---------)).))))...)).. ( -33.10) >DroSec_CAF1 42382 93 - 1 AACGCCAGUGGAACACAAUCCACACGGAAGCCGGCUGAUAGUCUGGCCAGCAGCAGCACCACUGCAAAUGCCACCACAG---------CCACCACAUUGCCA ...((..((((.......(((....)))....(((((......((((.....((((.....))))....))))...)))---------)).))))...)).. ( -26.30) >DroSim_CAF1 41431 93 - 1 ACCGCCAGUGGAACACAAUCCACACGGAAGCCGGCUGAUAGUCUGGGCAGCAGCAGCACCACUGCAAAUGCCACCACAG---------CCACCACAUUGCCA .(((...(((((......))))).))).....(((((........((((...((((.....))))...))))....)))---------))............ ( -29.10) >DroEre_CAF1 42252 102 - 1 ACCGCCAGUGGAACACAAUCCACUCGGAAGCCGGCCGAUAGUCUGGCCAGCAGCAGCACCACUGCAAGUGCCACCACAGCCUCCACAGCCACCACUGCGCCA ...((((((((..(((..(((....))).((.(((((......))))).)).((((.....))))..)))........((.......))..)))))).)).. ( -33.00) >DroYak_CAF1 45055 84 - 1 ACCGCCAGUGGAACGCAAUCCACACGAAAGCCGGCUGAUGGUCCGGCCACAAGCAGCACCACUGCAAAUGCCA------------------CCACUUCGCCA ...((.(((((...(((............((((((.....).))))).....((((.....))))...)))..------------------)))))..)).. ( -24.90) >DroAna_CAF1 41719 84 - 1 ACAGUUAGUGGAACCCAGGACACUCGAAAGCCGGCGGAAA------------CAAGCACCACGGUGAAUGUUACGGUCG---CCA---CCACCACCCUGUCC ((((...((((......((.....(....)))(((((.((------------((..(((....)))..))))....)))---)).---...)))).)))).. ( -23.80) >consensus ACCGCCAGUGGAACACAAUCCACACGGAAGCCGGCUGAUAGUCUGGCCAGCAGCAGCACCACUGCAAAUGCCACCACAG_________CCACCACAUUGCCA ...(((.(((((......))))).(....)..))).................((((.....))))..................................... (-13.33 = -13.88 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:07 2006