Locus 1122

Sequence ID 2R_DroMel_CAF1
Location 4,498,491 – 4,498,581
Length 90
Max. P 0.826272
window1979

overview

Window 9

Location 4,498,491 – 4,498,581
Length 90
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 83.32
Mean single sequence MFE -28.78
Consensus MFE -19.64
Energy contribution -18.96
Covariance contribution -0.68
Combinations/Pair 1.17
Mean z-score -2.09
Structure conservation index 0.68
SVM decision value 0.70
SVM RNA-class probability 0.826272
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4498491 90 + 20766785
CAAUUUGUGGCCUGCAAAACACCGGCAAAAGUUAGUGGCUAAUAACGGUCAUCUAACUAUUUGUCCAACUGGCCAUG--------UGGCCACGGUGAC
...(((((.....))))).(((((((((((((((((((((......))))).)))))).))))))....(((((...--------.))))).)))).. ( -33.30)
>DroSec_CAF1 31721 98 + 1
CAAUUAGUGGCCCGCAAAACACCGGCAAAAGUUGGCGGCUAAUAACGGUCAUCUAACUAUUUGUCCAACUGGCCAUGUGGUCAUGUGGCCAUAGUGAC
......((((((.(((.......((((((((((((.((((......))))..)))))).))))))....(((((....))))))))))))))...... ( -31.20)
>DroSim_CAF1 31924 98 + 1
CAAUUAGUGGCCCGCAAAACACCGGCAAAAGUUGGCGGCUAAUAACGGUCAUCUAACUAUUUGUCCAACUGGCCAUGUGGUCAUGUGGCCAUAGUGCC
......((((((.(((.......((((((((((((.((((......))))..)))))).))))))....(((((....))))))))))))))...... ( -31.20)
>DroEre_CAF1 32029 89 + 1
CAAUUAGUGGCCCGCAAAACACCGGCAAAAGUUGGCGACUAAUAACGGUCAUCUGGCUAUUUGUCCAACUGGCCAUGUGGCCAUGUGG---------C
..((((((.(((.((...............)).))).))))))....(((((.(((((((.((.((....)).)).))))))).))))---------) ( -30.36)
>DroYak_CAF1 34961 80 + 1
CAAUUAGUGGCCUGCAAAACACCGGCAAAAGUUGGCGACUAAUAACGGUCAUCUGGCUAUUUGUCCAACUGCCCAUGUA------------------C
..((((((.(((.((...............)).))).))))))...((.((..((((.....).)))..)).)).....------------------. ( -17.86)
>consensus
CAAUUAGUGGCCCGCAAAACACCGGCAAAAGUUGGCGGCUAAUAACGGUCAUCUAACUAUUUGUCCAACUGGCCAUGUGG_CAUGUGGCCA__GUG_C
......((((((.(.....)...((((((((((((.((((......))))..)))))).)))))).....))))))...................... (-19.64 = -18.96 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:03 2006