| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,485,844 – 4,485,958 |
| Length | 114 |
| Max. P | 0.522484 |
| Location | 4,485,844 – 4,485,958 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.19 |
| Mean single sequence MFE | -39.27 |
| Consensus MFE | -24.94 |
| Energy contribution | -23.95 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.49 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4485844 114 + 20766785 AGCUGGGACCAUGACUGGUAUUGUUUAGCUGCAGGAUGAUGGACUCGAUAGAGUCUACGUGGGUGGUAAUUGACGAAACAGUGGUGGGACUAUUAUGACCU---GUCGUUGGACGUU ...(((..((((.((((...(((((..((..(...(((.(((((((....))))))))))..)..))....)))))..)))).))))..))).........---(((....)))... ( -37.40) >DroGri_CAF1 21995 114 + 1 AGCUGGGUCCAUGAUUGCUAUUGUUUAGCUGCAGUAUAAUGGACUCAAUUGAGUCCACGUGUGUGGUUAUCGAGGAGACUGUAGUGGGAUUAGGAUGCGCC---AUCGCAGGUCGCU ((((((((((((.(((((............)))))...))))))))).((((..((((....))))...))))...(((((..((((............))---))..)).)))))) ( -37.10) >DroEre_CAF1 19856 114 + 1 AACUGGGGCCGUGGCUGGUGUUGUUCAGCUGCAGGAUGAUGGACUCGAUGGAGUCUACGUGGGUGGUAAUCGAGGAAACAGUGGUGGGGCUGUUAAGACCG---UUCGUUGGGCGUU .......((((..(((((......)))))..)..((((((((.((((((.....((((....))))..))))))..((((((......))))))....)))---.))))).)))... ( -39.20) >DroYak_CAF1 22959 114 + 1 AGCUGGGACCAUGACUGGUGUUGUUCAGCUGCAGGAUGAUGGACUCGAUGGAGUCCACGUGAGUGGUAAUCGAGGAAACAGUGGUGGGACUGUUAUGACCG---GUCGUUGGGCGUU (((((((((((....))))....)))))))((..((((((((.((((((.....((((....))))..))))))..((((((......))))))....)).---))))))..))... ( -42.20) >DroMoj_CAF1 25410 117 + 1 AGCUGGGUCCAUGGCUGCUGUGGUUCAGCUGCAGUAUGAUCGACUCAAUGGAGUCCACGUGCGUGGUGAUCGACGAGACAGUGGUGGGAUUGCUCUGCAUCACGGUAGCGGGUCGCU (((..(..((...(((((((((((.(((..(((((.((((((((((....)))))(((....)))..)))))((......))......))))).))).)))))))))))))..)))) ( -44.10) >DroAna_CAF1 19171 111 + 1 AGCUGGGUCCGUGGCUGGUGUUGUUCAGCUGUAGGAUGAUGGACUCGAUGGAAUCCACAUGGGUGGUGAUUGAAGAGAUGGUGGUGGGACUC---UGGCCG---GUCGUCGGGCGCU (((.(((((((..(((((......)))))..)...((.((.(.(((........((((....))))........))).).)).)).))))))---..(((.---(....).)))))) ( -35.59) >consensus AGCUGGGUCCAUGACUGGUGUUGUUCAGCUGCAGGAUGAUGGACUCGAUGGAGUCCACGUGGGUGGUAAUCGAGGAAACAGUGGUGGGACUGUUAUGACCG___GUCGUUGGGCGCU (((.((..((((.((((...((.(((.((..(...(((.(((((((....))))))))))..)..))....))).)).)))).))))..)).....(.(((........))).)))) (-24.94 = -23.95 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:59 2006