| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,455,557 – 4,455,648 |
| Length | 91 |
| Max. P | 0.544128 |
| Location | 4,455,557 – 4,455,648 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 83.57 |
| Mean single sequence MFE | -16.31 |
| Consensus MFE | -12.87 |
| Energy contribution | -12.95 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4455557 91 + 20766785 AAAAAA--ACGUAGCAGUAGUAAUAAACAAUAAACAAGGCAGCCAGCCCAUCAUCGUUGUUGUUGCA---GCCGAUAGUGCAAAUAUGCACAAUGA ......--.(((....((.(((((((.((((......(((.....))).......))))))))))).---)).....(((((....))))).))). ( -18.22) >DroSec_CAF1 3276 91 + 1 AAAAAA--ACGUAGCAGUAGUAAUAAACAAUAAACAAGGCAGGCAGCCCAUCAUCGUUGUUAUUGCA---GCCGAUAGUGCAAAUAUGCACAAUGA ......--.(((.((.((((((((((...........(((.....)))........)))))))))).---)).....(((((....))))).))). ( -19.31) >DroSim_CAF1 3356 91 + 1 AAAAAA--ACGUAGCAGUAGUAAUAAACAAUAAACAAGGCAGGCAGCCCAUCAUCGUUGUUAUUGCA---GCCGAUAGUGCAAAUAUGCACAAUGA ......--.(((.((.((((((((((...........(((.....)))........)))))))))).---)).....(((((....))))).))). ( -19.31) >DroEre_CAF1 3730 87 + 1 AAAAAA--ACAUAGUAGUAGUAAUAAACAAUAAACAAAGC----AGCUCAUCAUCGUUGUUGUUGCA---GGUGAUAGUGCAAAUAUGCACAAUGA ......--.(((..............((....((((..((----(((........)))))))))...---.))....(((((....))))).))). ( -13.90) >DroYak_CAF1 3112 89 + 1 AAAAAAAUACAUAGUAGUGGUAAUAAACAAUAAACAAGGC----AGCUCAUCAUCGUUGUUGCUGCA---GCUGAUAGUGCAAAUAUCCACAAUAA ................((((..................((----(((.((.......))..))))).---((.......))......))))..... ( -15.80) >DroAna_CAF1 3316 80 + 1 AAAAAU--ACAAAGUUAUAGUAAUAAACAA-------G----CCAUCCCAU---CGUUGUUAUUGCAGUUGCUGAUAGUGCAAAUAUGCAUAAUGA ......--....(((.((.(((((((...(-------(----(........---.))).))))))).)).)))....(((((....)))))..... ( -11.30) >consensus AAAAAA__ACAUAGCAGUAGUAAUAAACAAUAAACAAGGC___CAGCCCAUCAUCGUUGUUAUUGCA___GCCGAUAGUGCAAAUAUGCACAAUGA ...................(((((((.((((......(((.....))).......)))))))))))...........(((((....)))))..... (-12.87 = -12.95 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:52 2006