Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,449,341 – 4,449,442 |
Length | 101 |
Max. P | 0.533963 |
Location | 4,449,341 – 4,449,442 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.98 |
Mean single sequence MFE | -23.26 |
Consensus MFE | -14.29 |
Energy contribution | -13.48 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.31 |
Mean z-score | -1.43 |
Structure conservation index | 0.61 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4449341 101 - 20766785 CUCACGUUGGAAAUUAUUGGAAUGUUGCGAAACUGCUUGCAACAACAAUUCGAUAUACGGUGCUCCCUGUAUGAAAGUGAGUCGAAUGAAAUCAAAUA-AUA--- ............((((((.((.((((((((......))))))))...(((((((.(((.((((.....))))....))).)))))))....)).))))-)).--- ( -23.20) >DroPse_CAF1 6480 99 - 1 CUUACUCUGGAAAUUAUAGGAAUGCUGCGAAAUUGUUUGCAGCAGCAGUUCGACAUACGAUGUACGCUUUAUGAAAGUAAGUAA-CCGAA-----GUGCAUACAG ......(((.............(((((((((....)))))))))(((.((((((((...))))..((((.((....))))))..-.))))-----.)))...))) ( -25.70) >DroSim_CAF1 2920 101 - 1 CUCACGUUGGAAAUUAUUGGAAUGUUGCGAAACUGCUUGCAGCAACAAUUCGAUAUACGAUGCUCCCUGUAUGAGAGUAAGUCAAACGAAAUCAAAUU-AUA--- ....((((.((...(((((((.((((((.............)))))).))))))).....(((((.(.....).)))))..)).))))..........-...--- ( -21.62) >DroEre_CAF1 3134 104 - 1 CUUACGUUGGAAAUUAUUGGAAUGUUGCGAAACUGCUUGCAGCAACAAUUUGAUAUACGAUGCUCCCUCUAUGAGAGUAAGUUGAACGAAAGAAAGUA-AUAUAA (((.((((.((...(((..((.((((((.............)))))).))..))).....(((((.(.....).)))))..)).)))).)))......-...... ( -22.12) >DroYak_CAF1 2570 99 - 1 CUUACGCUGGAAAUUAUUGGAAUGUUGCGAAACUGCUUGCAGCAACAAUUUGAUAUACGAUGCUCUCUCUAUGAGAGUAAGUUGAAA-----AAAAUA-GUAUAA ..((..(((.....(((..((.((((((.............)))))).))..)))..((((((((((.....))))))..))))...-----....))-)..)). ( -23.32) >DroPer_CAF1 7868 99 - 1 CUUACUCUGGAAAUUAUAGGAAUGCUGCGAAAUUGUUUGCAGCAGCAGUUUGACAUACGAUGUACGCUUUAUGAAAGUAAGUAA-CCGAA-----GUGCAUACAG ......(((.............(((((((((....)))))))))(((.((((((((...))))..((((.((....))))))..-.))))-----.)))...))) ( -23.60) >consensus CUUACGCUGGAAAUUAUUGGAAUGUUGCGAAACUGCUUGCAGCAACAAUUCGAUAUACGAUGCUCCCUCUAUGAAAGUAAGUAAAACGAA___AAAUA_AUA_A_ (((((.................((((((((......)))))))).....(((.....)))................)))))........................ (-14.29 = -13.48 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:50 2006