| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,439,517 – 4,439,620 |
| Length | 103 |
| Max. P | 0.954667 |
| Location | 4,439,517 – 4,439,620 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 77.56 |
| Mean single sequence MFE | -43.47 |
| Consensus MFE | -22.52 |
| Energy contribution | -23.25 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.954667 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4439517 103 + 20766785 --UGGGGCCGCACUGGUGCAGAAACCCCGGGCUCCAGGCACCGGAAUCUGUUUCUUGCCAUUUCGCAGCUCCAGCUGCACCAGCUGGGCCAAAGCCGCCUCAACU --((((((..(((((((((((((((.((((((.....)).)))).....))))).)))......(((((....)))))))))).))(((....)))))))))... ( -44.80) >DroVir_CAF1 5343 105 + 1 GAUGUUUCAGUUGUGGUGCAAAUGCCCCGGUUGCCGGGCACCGGUAUCUGCCUCUUGCCAUUGCGUACUUCAAGCGCCACUAGCUGCGCCAGAGCUGCUUCUAUU .......(((((.(((((((..(((((.((...)))))))..((((.........))))...((((.......)))).......))))))).)))))........ ( -34.20) >DroPse_CAF1 1627 103 + 1 --UGCCGCGGCAUCGGUGCAGAAUUCUCGGGAGCCUGGGACCAAUAUCUGCUGCUUGCCAUUUCGUAGUUCGAGUUGCACUAGCUGUGCCAGAGCCGCUUCGAUU --....(((((.((((..(((...((((((....))))))........(((.(((((..(((....))).))))).)))....)))..)).)))))))....... ( -35.40) >DroEre_CAF1 4805 103 + 1 --UGGGGCCGCACUGGUGCAGAGCCCCCGGGCUCCAGGCACCGGAAUCUGUUUCUUGCCAUUUCGCAGCUCCAGCUGCACCAGCUGGGCCAGAGCCGCCCCAACU --((((((.((.(((((((.(((((....)))))...)))))))..((((.....(((......)))((.(((((((...))))))))))))))).))))))... ( -57.30) >DroYak_CAF1 4661 103 + 1 --UGGGGCCGCACUGGUGCAGAACUCACGGGCUCCAGGCACUGGAAUCUGUUUCUUGCCGUUUCGCAGCUCCAGCUGCACUAGCUGCGCCAGAGCCGCCCCAACU --((((((.((.(((((((((.....((((..(((((...)))))..)))).............(((((....))))).....))))))))).)).))))))... ( -53.70) >DroPer_CAF1 1678 103 + 1 --UGCCGCGGCAUCGGUGCAGAAUUCUCGGGAGCCUGGGACCAAUAUCUGCUGCUUGCCAUUUCGUAGUUCGAGUUGCACUAGCUGUGCCAGAGCCGCUUCGAUU --....(((((.((((..(((...((((((....))))))........(((.(((((..(((....))).))))).)))....)))..)).)))))))....... ( -35.40) >consensus __UGGGGCCGCACUGGUGCAGAACCCCCGGGCGCCAGGCACCGGAAUCUGCUUCUUGCCAUUUCGCAGCUCCAGCUGCACUAGCUGCGCCAGAGCCGCCUCAACU ......((.((.(((((((((........(((...(((((........)))))...))).....(((((....))))).....))))))))).)).))....... (-22.52 = -23.25 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:46 2006