| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,436,902 – 4,437,006 |
| Length | 104 |
| Max. P | 0.704647 |
| Location | 4,436,902 – 4,437,006 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.70 |
| Mean single sequence MFE | -24.84 |
| Consensus MFE | -11.31 |
| Energy contribution | -11.55 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704647 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4436902 104 - 20766785 AGGAUAUCAAGCAUUUAAAAAGUACUGCGCCAGAAGUCUACACCUUACAU--UCGUACCCUGGCGUGGA--CGAUUUU--------GAAUGCA----UGCGUAUCAAAUACCUAGCUAAU ..(((((((.((((((((((.((.(..((((((..(....)....(((..--..)))..))))))..))--)..))))--------)))))).----)).)))))............... ( -30.40) >DroPse_CAF1 7568 116 - 1 A-GAUACGGAGCAUUU-AAAAGUACAGAGCCAAAUCUUUU-ACUUUACAUACUCUU-UUCCUGCAUGGACACUAUUUAGGCAAAUAGAAGGUAUAUGUACCUAUUAAAUACCUAGCUAAU .-.......(((....-.((((((.(((......)))..)-))))).....((.((-(.((((.((((...)))).)))).))).)).((((((.((.......)).)))))).)))... ( -18.30) >DroSec_CAF1 6756 99 - 1 GGGAUAUCAAGCAUUUUAAAAGUACUGUGCCAGAAGUCUAGAUCUAG-------AUAUCCUGGCGUGGA--CGAUUUU--------GAAUGCA----UGCAUAUCAAAUACCUAGCUAAU ..(((((((.((((((.(((.((.(..((((((..(((((....)))-------))...))))))..))--)..))).--------)))))).----)).)))))............... ( -30.30) >DroSim_CAF1 7270 104 - 1 GGGAUAUCAAGCAUUUUAAAAGUACUGUGCCAGAAGUCUAGAUCUUACAU--UCUUAUCCUGGCGUGGA--CGAUUUU--------GAAUGCA----UGCGUAUCAAAUACCUAGCUAAU ..(((((((.((((((.(((.((.(..((((((......(((........--)))....))))))..))--)..))).--------)))))).----)).)))))............... ( -26.40) >DroPer_CAF1 7583 115 - 1 A-GAUGCGGAGCAUUU-AAAAGUACAGAGCCAAAUCUUUU-ACUUUACAUACUCUUUUUCCUGCAUGGA--CUAUUUAGGCAAAUAGAAGGUAUAUGUACCUAUUAAAUACCUAGCUAAU .-...((((((.((..-.((((((.(((......)))..)-)))))..)).))))...(((.....)))--.....((((....(((.(((((....))))).)))....)))))).... ( -18.80) >consensus AGGAUAUCAAGCAUUU_AAAAGUACUGAGCCAGAAGUCUA_ACCUUACAU__UCUUAUCCUGGCGUGGA__CGAUUUU________GAAUGCA____UGCCUAUCAAAUACCUAGCUAAU .........(((............(..((((((..........................))))))..)..................(((((((....))))).)).........)))... (-11.31 = -11.55 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:45 2006