Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,435,721 – 4,435,817 |
Length | 96 |
Max. P | 0.683638 |
Location | 4,435,721 – 4,435,817 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 69.61 |
Mean single sequence MFE | -36.78 |
Consensus MFE | -14.58 |
Energy contribution | -14.98 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.21 |
Mean z-score | -1.78 |
Structure conservation index | 0.40 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4435721 96 + 20766785 GAAAGUUUCACCAGCUUUCUCAGCGCCGA----------AU-----CGAU------UG---CCGGCCAGCCGGAUAAGCCGAUUGGCAGCAACGGCGACGCCGCCAAUUUGAUGGGCUCG (((((((.....)))))))...(.(((..----------((-----((((------((---.((((..((((.....(((....))).....))))...)))).))).))))).))).). ( -36.00) >DroPse_CAF1 6364 114 + 1 GAAAGUUUCACCAGCUUUCUAAGUGCCAGCAGCUGUGGCAUCAUCCCGACUGAUACUGCCACAGGGCAGCAAGAGAAAUUCAAUGGGAACAAUGGGGAUACC------CUGCUGUCCUCA ....(((((......(((((...(((..((..((((((((..(((......)))..)))))))).)).)))..))))).......)))))..((((((((..------....)))))))) ( -37.82) >DroSec_CAF1 5578 96 + 1 GAAAGUUUCACCAGCUUUCUCAGCGCCGA----------AU-----CGAU------UG---CCGGACAGCCGGAUAAGCCGAACGGCAGCAACGGCGACGCCGCCAAUUUGAUGGGCUCG (((((((.....)))))))...(.(((..----------((-----((((------((---.(((...((((.....(((....))).....))))....))).))).))))).))).). ( -34.20) >DroSim_CAF1 5526 96 + 1 GAAAGUUUCACCAGCUUUCUCAGCGCCGA----------AU-----CGAU------UG---CCGGACAGCCGGAUAAGCCGAACGGCAGCAACGGCGACGCCGCCAAUUUGAUGGGCUCG (((((((.....)))))))...(.(((..----------((-----((((------((---.(((...((((.....(((....))).....))))....))).))).))))).))).). ( -34.20) >DroPer_CAF1 6379 114 + 1 GAAAGUUUCACCAGCUUUCUAAGUGCCAGCAGCUGUGGCAUCAUCCCGACUGAUAAUGCCACAGGGCAGCAAGAGAAAUUCAAUGGGAACAAUGGGGAUACC------CUGCUGGCCUCA (((((((.....)))))))..((.(((((((((((((((((.(((......))).)))))))))..............((((.((....)).))))......------)))))))))).. ( -41.70) >consensus GAAAGUUUCACCAGCUUUCUCAGCGCCGA__________AU_____CGAU______UG___CCGGACAGCCGGAUAAGCCGAAUGGCAGCAACGGCGACGCCGCCAAUUUGAUGGGCUCG (((((((.....)))))))....(((((.................................((((....))))....(((....))).....)))))....................... (-14.58 = -14.98 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:42 2006