Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,424,342 – 4,424,461 |
Length | 119 |
Max. P | 0.993354 |
Location | 4,424,342 – 4,424,461 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 93.36 |
Mean single sequence MFE | -37.22 |
Consensus MFE | -33.00 |
Energy contribution | -32.76 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.14 |
Mean z-score | -1.89 |
Structure conservation index | 0.89 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991703 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4424342 119 + 20766785 GUAUUAGUUUGGUUAUCUUUGCUUAAAGCGCUAUCAAUGAAGGUCAUUUAAUGUUCGACCUUUCGCUGUACUUACCUCCUUGGAAUGCUCCAGGAGCCAGGUCUUGGCGGAGGUGGCGU .....(((..((....))..)))....((((((((...(((((((...........)))))))(((((.((((..(((((.(((....))))))))..))))..)))))..)))))))) ( -37.60) >DroSec_CAF1 527 119 + 1 GUAUUAGUUUGGUUAUCUUUGCUUAAAGCGCUAUCAAUGAAGGUCAAUUAAUCUUCGACCUUUCGCUGUACUUACCUCCUUGGAAUGCUCCAGGAGCCAGGUCUUGGCGGAGGUGGCGU .....(((..((....))..)))....((((((((..(((((((......)))))))....(((((((.((((..(((((.(((....))))))))..))))..))))))))))))))) ( -37.70) >DroSim_CAF1 320 119 + 1 GUAUUAGUUUGGUUAUCUUUGCUUAAAGCGCUAUCAAUGAAGGUCAAUUAAUGUUCGACCUUUCGCUGUACUUACCUCCUUGGAAUGCUCCAGGAGCCAGGUCUUGGCGGAGGUGGCGU .....(((..((....))..)))....((((((((...((((((((((....))).)))))))(((((.((((..(((((.(((....))))))))..))))..)))))..)))))))) ( -38.50) >DroEre_CAF1 577 119 + 1 AUAUUAGUUUAGUUAUCUUUGCUUAAGGCGUUAUCAAUGAAGGACAAUUAAUUUUCGACCUUUCGUUGUACUUACCUCCUUGGAAUGCUCCAGGAGCCAGGUCUUGGCGGAGGUGGCGU ...........((((((((((((.(((((((...(((((((((................))))))))).))....(((((.(((....))))))))....))))))))))))))))).. ( -38.39) >DroYak_CAF1 537 119 + 1 ACAUUGGUUUAGUUAUCUUAGCUUCAAGAGUUAUCAAUGAAGGUCAAUCAAUGUUCGACCUUUCGUCGUACUUACCUCCUUGGAAUGCUCCAGGAGCCAUGUCUUGGCGGAAGUGGCGU .(((((((.......((((......))))...)))))))(((((((((....))).)))))).((((..((((.((((((.(((....)))))))((((.....)))))))))))))). ( -33.90) >consensus GUAUUAGUUUGGUUAUCUUUGCUUAAAGCGCUAUCAAUGAAGGUCAAUUAAUGUUCGACCUUUCGCUGUACUUACCUCCUUGGAAUGCUCCAGGAGCCAGGUCUUGGCGGAGGUGGCGU .....(((..((....))..)))....((((((((...(((((((...........)))))))(((((.((((..(((((.(((....))))))))..))))..)))))..)))))))) (-33.00 = -32.76 + -0.24)
Location | 4,424,342 – 4,424,461 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 93.36 |
Mean single sequence MFE | -29.63 |
Consensus MFE | -28.70 |
Energy contribution | -28.54 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.11 |
Mean z-score | -1.63 |
Structure conservation index | 0.97 |
SVM decision value | 2.39 |
SVM RNA-class probability | 0.993354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4424342 119 - 20766785 ACGCCACCUCCGCCAAGACCUGGCUCCUGGAGCAUUCCAAGGAGGUAAGUACAGCGAAAGGUCGAACAUUAAAUGACCUUCAUUGAUAGCGCUUUAAGCAAAGAUAACCAAACUAAUAC ..((.((((((((((.....))))...(((......))).)))))).....(((.(((.(((((.........)))))))).)))...))((.....)).................... ( -29.60) >DroSec_CAF1 527 119 - 1 ACGCCACCUCCGCCAAGACCUGGCUCCUGGAGCAUUCCAAGGAGGUAAGUACAGCGAAAGGUCGAAGAUUAAUUGACCUUCAUUGAUAGCGCUUUAAGCAAAGAUAACCAAACUAAUAC ..((.((((((((((.....))))...(((......))).)))))).....(((.(((.((((((.......))))))))).)))...))((.....)).................... ( -31.90) >DroSim_CAF1 320 119 - 1 ACGCCACCUCCGCCAAGACCUGGCUCCUGGAGCAUUCCAAGGAGGUAAGUACAGCGAAAGGUCGAACAUUAAUUGACCUUCAUUGAUAGCGCUUUAAGCAAAGAUAACCAAACUAAUAC ..((.((((((((((.....))))...(((......))).)))))).....(((.(((.((((((.......))))))))).)))...))((.....)).................... ( -31.90) >DroEre_CAF1 577 119 - 1 ACGCCACCUCCGCCAAGACCUGGCUCCUGGAGCAUUCCAAGGAGGUAAGUACAACGAAAGGUCGAAAAUUAAUUGUCCUUCAUUGAUAACGCCUUAAGCAAAGAUAACUAAACUAAUAU ..((.((((((((((.....))))...(((......))).)))))).....(((.(((.((.(((.......))).))))).)))............)).................... ( -26.80) >DroYak_CAF1 537 119 - 1 ACGCCACUUCCGCCAAGACAUGGCUCCUGGAGCAUUCCAAGGAGGUAAGUACGACGAAAGGUCGAACAUUGAUUGACCUUCAUUGAUAACUCUUGAAGCUAAGAUAACUAAACCAAUGU .((..((((((((((.....))))((((((......)).)))))).)))).))....((((((((.......))))))))(((((.....(((((....))))).........))))). ( -27.94) >consensus ACGCCACCUCCGCCAAGACCUGGCUCCUGGAGCAUUCCAAGGAGGUAAGUACAGCGAAAGGUCGAACAUUAAUUGACCUUCAUUGAUAGCGCUUUAAGCAAAGAUAACCAAACUAAUAC ..((.((((((((((.....))))...(((......))).)))))).....(((.(((.((((((.......))))))))).)))............)).................... (-28.70 = -28.54 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:40 2006