Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,423,289 – 4,423,409 |
Length | 120 |
Max. P | 0.618195 |
Location | 4,423,289 – 4,423,409 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.67 |
Mean single sequence MFE | -46.88 |
Consensus MFE | -25.84 |
Energy contribution | -26.49 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.29 |
Mean z-score | -1.90 |
Structure conservation index | 0.55 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618195 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4423289 120 - 20766785 CUUUAAUGGCCGGAAAGACGGUCGACGAGGCCAGGACCGAGCUGUCCAAGGCUGGCCUGUGCGGCAACGAGCUGGAUAACUUGUUGCCCCACAAGGUGUUCGUCGGCAACCGGCCCACAA .......((((((.......((((((((((((.((((......))))..)))).(((((((.(((((((((........))))))))).))).))))..))))))))..))))))..... ( -57.40) >DroVir_CAF1 5732 120 - 1 CACUAAUGAUGGGCAAGACCGCCGACCAGGCCAAAGAAGAGCUGUCCAAGGCGGGCUUGUGUGGCAACGAGCUGGACAACUUGUUGCCACACAAGGUGUUUGCCGGCAACAGGCCGACCA ...........((((((.(((((.....((((......).)))......))))).((((((((((((((((........))))))))))))))))...))))))(((.....)))..... ( -53.50) >DroGri_CAF1 6531 120 - 1 CCUUAAUGAUGGGCAAGACGAGUGAUCAGGCCAGAGAGGAGCUGUCCAAGGCGGGCUUGUGCGGCAACGAGCUGGACAACUUGUUGCCCCACAAAGUCUUUGCCGGCAAUCGGCCAACAA ......((.(((.(.....((....))..(((.....(((....)))..((((((((((((.(((((((((........))))))))).))).))))))..))))))....).))).)). ( -44.60) >DroWil_CAF1 5936 120 - 1 CUCUAAUGCAGGGCAAGACCGCUGAUCAGGCCCGCGAAGAACUGUCCAAGGCCGGUGUGUGUGGCAAUGAGCUGGAGAACCUCUUGCCCCACAAGGUAUUUGUUGGCAAUCGUCCAACAA ......((..(((((((((((((.((...(((((((....((((.(....).)))).)))).))).)).))).))......))))))))..))......((((((((....).))))))) ( -39.20) >DroMoj_CAF1 6608 120 - 1 CCCUUAUGAUGGGCAAGACCGCCGAUGAGGCCAAGAAUGAGCUCUCCAAGGCGGGCCUGUGCGGCAACGAGCUGGAAAACUUGUUGCCCCAUAAGGUCUUCGUUGGCAACCGCCCGACCA .(((((((((((((....(((((...(((((((....)).)).)))...)))))))))))..(((((((((.(....).))))))))).)))))))...(((..(((....))))))... ( -49.40) >DroAna_CAF1 5576 120 - 1 CCCUCAUGAUGGGCAAGACUAGCGACGAGGCCCGUGCGGAGCUCUCCAAGGCCGGCUUGUGCGGCAAUGAACUGGAUAACUUGCUGCCUCACAAAGUAUUCGUUGGCAAUCGCCCGACGA ......((.(((((....(((((((...((((.....(((....)))..)))).(((((((.((((..((..........))..)))).))).))))..))))))).....))))).)). ( -37.20) >consensus CCCUAAUGAUGGGCAAGACCGCCGACCAGGCCAGAGAAGAGCUGUCCAAGGCGGGCUUGUGCGGCAACGAGCUGGACAACUUGUUGCCCCACAAGGUAUUCGUCGGCAACCGGCCGACAA ...........((.......((((((.(((((........(((......))).)))))(((.(((((((((........))))))))).))).........))))))......))..... (-25.84 = -26.49 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:38 2006