Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,421,827 – 4,421,919 |
Length | 92 |
Max. P | 0.617365 |
Location | 4,421,827 – 4,421,919 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 78.63 |
Mean single sequence MFE | -28.77 |
Consensus MFE | -18.33 |
Energy contribution | -17.50 |
Covariance contribution | -0.82 |
Combinations/Pair | 1.54 |
Mean z-score | -1.40 |
Structure conservation index | 0.64 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4421827 92 + 20766785 GAGGGAUCAUCCUCUCCGUUGGCCACAAUGGUGUCGGUGAACACUGAAGAGAUCAGGCUGAUGGAGGACAUCUUUU-GCUUUUUCGGAAAGUU (((((((..(((..(((((..(((....((((.(((((....)))))....)))))))..)))))))).)))))))-((((((...)))))). ( -27.90) >DroSec_CAF1 4410 92 + 1 GAGGGAUCAUCCUCUCCGUUGGCCACAACGGUGUCAGUGAACACUGAAGAGAUCAGGCUGAUGGAGGACAUCUUUU-GCCUUUUCGGAAAGUU ((((......)))).((((((....))))))..(((((....)))))...((..((((.((((.....))))....-))))..))........ ( -30.00) >DroSim_CAF1 4332 92 + 1 GAGGGAUCAUCCUCUCCGUUGGCCACAACGGUGUCAGUGAACACUGAAGAGAUCAGGCUGAUGGAGGACAUCUUUU-GCCUUUUCGGAAAGUU ((((......)))).((((((....))))))..(((((....)))))...((..((((.((((.....))))....-))))..))........ ( -30.00) >DroEre_CAF1 4310 92 + 1 GAAGGAUCAUCCUCUCCACUGACCACAACGGUGUCAGUGAACGCCGAAGAGGUCAUGCUGAUAGAGGACAUCUUUU-GUCUUUUUGGAAAGUU (((((((..((((((.((((((((.(..((((((......))))))..).))))).).))..)))))).)))))))-.(((....)))..... ( -28.90) >DroYak_CAF1 4564 92 + 1 GAGGGAUCAUCCUCACCGUUGGCCACAACGGAGUCAGUAAACGCUGAAGAGUCCAUGCUGAUAGAGGACAUCUUUU-GCCUUUUCGGAAAGUU (((((((..(((((.((((((....)))))).(((((((...(((....)))...))))))).))))).)))))))-.((.....))...... ( -30.00) >DroPer_CAF1 4102 92 + 1 GUGGUUUCAUGCUCCUCGUCGGCAAUUGUCGUCACUGUAAA-AUCGACCAGAGUAGGCACACUGACCACGGGCUUCGGUUUUUCUGGAAGCUU ((((((...((((.((((.((((....)))).)..((....-..))....)))..))))....))))))(((((((.(......).))))))) ( -25.80) >consensus GAGGGAUCAUCCUCUCCGUUGGCCACAACGGUGUCAGUGAACACUGAAGAGAUCAGGCUGAUGGAGGACAUCUUUU_GCCUUUUCGGAAAGUU (((((((..(((((.((((((....)))))).((((((..................)))))).))))).)))))))................. (-18.33 = -17.50 + -0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:37 2006