Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 943,455 – 943,575 |
Length | 120 |
Max. P | 0.585279 |
Location | 943,455 – 943,575 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -29.33 |
Consensus MFE | -24.85 |
Energy contribution | -24.63 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.10 |
Structure conservation index | 0.85 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 943455 120 - 20766785 UAAUCAACAUAGACUCCGGAUCUUGGCCUGUGUUAACAGCCAAGCGUCCAGGAUAUCUCUCUGCUGCAUCUUCAUGCAACCAAUCACUGAUAAGCAUUAUAUGUGUUGUUAAAUCAAAAU (((.(((((((...(((((((((((((.(((....))))))))).)))).)))........((((((((....))))...((.....))...)))).....))))))))))......... ( -31.00) >DroSim_CAF1 54765 120 - 1 UAAUCAACAUAGACUCCGGAUCUUGGCCUGUGUUAACAGCCAAACGUCCAGGAUAGCGCUCUGCCGCAUCUUCAUGCAACCAAUCACUGAUAAGCAUUAUAUGUGUUGUUAAAUCAAAAU (((.(((((((...(((((((.(((((.(((....))))))))..)))).)))..((((...)).((((....))))................))......))))))))))......... ( -27.10) >DroEre_CAF1 137211 120 - 1 UAAUCAACAUGGACUCCGGAUCUUGGCCUGUGUUAACAGCCAAACGUCCUGGAUAUCGCUCGGCUGCAUCUUCAUGCAACCAAUCACUGAUAAGCAUUAUAUGUGUUGUUAAAUCAAAAU (((.((((((....(((((((.(((((.(((....))))))))..)))).)))....(((.((.(((((....))))).)).(((...))).))).......)))))))))......... ( -29.90) >consensus UAAUCAACAUAGACUCCGGAUCUUGGCCUGUGUUAACAGCCAAACGUCCAGGAUAUCGCUCUGCUGCAUCUUCAUGCAACCAAUCACUGAUAAGCAUUAUAUGUGUUGUUAAAUCAAAAU (((.(((((((...(((((((.(((((.(((....))))))))..)))).))).........((.((((....))))...((.....))....))......))))))))))......... (-24.85 = -24.63 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:22 2006