Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,410,873 – 4,410,963 |
Length | 90 |
Max. P | 0.784911 |
Location | 4,410,873 – 4,410,963 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 88.96 |
Mean single sequence MFE | -33.92 |
Consensus MFE | -29.02 |
Energy contribution | -29.50 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.27 |
Mean z-score | -1.86 |
Structure conservation index | 0.86 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4410873 90 + 20766785 UCAACUCAUCCACUGGCUGGCGCAAGUAUUUCAGCGCCAGCUCGUUCAUCACCAUGCUCUUCUCGGUGUUGGGCUUGGCCAGUUGAGGGA ((((((...(((..(((((((((..........))))))))).(((((.((((...........)))).))))).)))..)))))).... ( -34.60) >DroSec_CAF1 20834 90 + 1 UCAGCUCGUCCACGGGCUGGCGCAAGUAUUUCAACGCCAGCUCGUUCAUCACCAGGCUCUUCUCGGUGUUGGGCUUGGCCAGUUGGGGGA .(((((((....)))))))((....)).(..(((((((((((((.....(((((((....))).)))).))))).))))..))))..).. ( -36.80) >DroSim_CAF1 21141 90 + 1 UCAGCUCGUCCACGGGCUGCCGCAAGUACUUCAGCGCCAGCUCGUUCAUCACCAGGCUCUUCUCGGUGUUGGGCUUGGCUAGUUGGGGGA .(((((((....))))))).(....)..((((((((((((((((.....(((((((....))).)))).))))).))))..))))))).. ( -35.50) >DroEre_CAF1 22482 90 + 1 UCAGCUCAUCCACGGGUUGGCGCAAGUACUUCAGCGCCAGCUCGUUCAUCACCAGGCUCUUUUCGGUGUUUGGCUUGGCCAGUUGAGGGA ((((((...((((((((((((((..........))))))))))))......((((((.((....)).))))))...))..)))))).... ( -35.00) >DroYak_CAF1 20284 90 + 1 UCAGCUCAUCAACGGGUUGGCGCAAAUACUUCAGCGCCAGCUCGUUCAUCACCAAGCUCUUCUCGGUGUUUGGCUUGGCCAGUUGAGGGA ((((((....(((((((((((((..........))))))))))))).....(((((((...(.....)...)))))))..)))))).... ( -36.20) >DroAna_CAF1 23420 90 + 1 UCAGUUCGUCCACUGGCUGUCGCAGGUACUUUAGCGCCAACUCAUUCAUGACCAUGCUCUUCUCAGUGUUUGGCUUGGCGAGCUGAGGAA ((((((((.(((...((((..(......)..))))(((((..((((...((.........))..)))).))))).))))))))))).... ( -25.40) >consensus UCAGCUCAUCCACGGGCUGGCGCAAGUACUUCAGCGCCAGCUCGUUCAUCACCAGGCUCUUCUCGGUGUUGGGCUUGGCCAGUUGAGGGA ((((((.....((((((((((((..........))))))))))))......(((((((...(.....)...)))))))..)))))).... (-29.02 = -29.50 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:30 2006