Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,408,899 – 4,409,009 |
Length | 110 |
Max. P | 0.684900 |
Location | 4,408,899 – 4,409,009 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 83.83 |
Mean single sequence MFE | -45.32 |
Consensus MFE | -34.57 |
Energy contribution | -34.80 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.22 |
Mean z-score | -1.98 |
Structure conservation index | 0.76 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4408899 110 - 20766785 AGCUGGCAUUGCUGAGUGGGCGCGGUGGUUGGGCCAGGGGCUCUGGUUUCACAGGCUGCGGAUUGAAUAUCUGCGGCGGAGCCUGAGGCUGCUGGGCUCCUGGGUAGCUU ....(((..((((.((.((((.((((.....((((..((((((((......)..(((((((((.....))))))))))))))))..)))))))).)))))).))))))). ( -50.90) >DroSec_CAF1 18861 110 - 1 AGCUGGCAUUGCUGAGUGGGCGCGGUGGUUGGGCUAGGGGCUCUGGUUUCACAGGCUGCGGAUUGAAUAUCUGUGGCGGAGCCUGAGGCUGCUGGCUUCCUGGGUAGCUU ....(((..((((.((..(((.(((..((((((((.(..((....))..)....((..(((((.....)))))..))..)))))..)))..))))))..)).))))))). ( -45.80) >DroSim_CAF1 18730 110 - 1 AGCUGGCAUUGCUGAGUGGGCGCGGUGGUUGGGCUAGGGGCUCUGGCUUUACAGGCUGCGGAUUGAAUAUCUGUGGCGGAGCCUGAGGCUGCUGGGCUCCUGGGUAGCUU ....(((..((((.((.((((.(((..((((((((.(((((....)))))....((..(((((.....)))))..))..)))))..)))..))).)))))).))))))). ( -47.20) >DroEre_CAF1 20536 110 - 1 AGCUGGCGUUGCUGAGUGGGCGCGGUGGUUGGGCCAAAGGCUCUGGUUUCACAGGCUGCGGAUUAAAUAUCUGCGGCGGAGGUUGAGGCUGCUGGGCUCCUGGGUAUGUU ....(((((.(((.((.((((.(((..(((.((((.......(((......)))(((((((((.....)))))))))...))))..)))..))).)))))).)))))))) ( -47.00) >DroYak_CAF1 18892 104 - 1 AGCUGGCGUUGCUGAGUGGGCGCGGUGGUUGGGCCAAAGGCUCUGGUUUCACAGGCUGCGGAUUGAAGAUCUGCGGCGGU------GGCAGCUGGGCUCCUGGGUAUGCU ....(((((.(((.((.((((.((((.((.(((((...)))))......(((..((((((((((...)))))))))).))------))).)))).)))))).)))))))) ( -46.40) >DroPer_CAF1 18758 101 - 1 AGCUGGCGUUGCUGAGAGGCCGGGGUGGGUGAUUCAGAGGUUCUUGCUUAACUGGCUGCGGAUUAAAUAUCUGUGG---------AGCCGGCUGGGACACUGGAUACGUU .(((.((.(((((....)).))).)).))).((((((..(((((.(((.....((((((((((.....))))))..---------))))))).))))).))))))..... ( -34.60) >consensus AGCUGGCAUUGCUGAGUGGGCGCGGUGGUUGGGCCAGAGGCUCUGGUUUCACAGGCUGCGGAUUGAAUAUCUGCGGCGGAGCCUGAGGCUGCUGGGCUCCUGGGUAGCUU .........((((.((.((((.(((((((((((((...)))))...........(((((((((.....))))))))).........)))))))).)))))).)))).... (-34.57 = -34.80 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:29 2006