Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,407,597 – 4,407,697 |
Length | 100 |
Max. P | 0.500000 |
Location | 4,407,597 – 4,407,697 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.83 |
Mean single sequence MFE | -23.45 |
Consensus MFE | -15.34 |
Energy contribution | -14.90 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.19 |
Mean z-score | -1.46 |
Structure conservation index | 0.65 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4407597 100 + 20766785 AGAGCGACUCUUCUGAGGUCGAGUGUGAUCAGAGUACUAACUAUAGCACCGAUAAUUCGGUAAGAGCUUACAUGCCAGGCUCUUAAUCGAG----GCCAACAAA .(.((..(((....)))((((.((((......(((....)))...))))))))..((((((((((((((.......)))))))).))))))----)))...... ( -27.80) >DroPse_CAF1 17487 99 + 1 AGAGCGACUCUUCUGAAGUUGAGUGCGAUCAGAGUACAAAUUAUAGCACCGAUAAUUCGGUAAGACUAGAGAUUUAAGAUUAGCAAA-GAA----UAGAAAAGA .......((.((((...(((((((((.......))))(((((.(((((((((....)))))..).)))..)))))....)))))..)-)))----.))...... ( -18.50) >DroEre_CAF1 17670 100 + 1 AGAGCGACUCUUCUGAGGUUGAGUGUGAUCAGAGUACAAACUAUAGCACCGAUAAUUCGGUAAGAGCUUACAUGCAAGGCUCUUAAUCAAA----GCCAACGUA ...((..(((....)))((((.((.((((..................(((((....)))))((((((((.......)))))))).))))..----)))))))). ( -24.60) >DroYak_CAF1 17609 100 + 1 AGAGCGACUCUUCUGAGGUUGAGUGUGAUCAGAGUACAAACUAUAGCACCGAUAAUUCGGUAAGAGCUUACAUUCAAGGCUCUUAAUCGAA----GCCAAAAAA .(.((..(((....)))((((.((((......(((....)))...))))))))..((((((((((((((.......)))))))).))))))----)))...... ( -26.40) >DroAna_CAF1 20255 104 + 1 AGAGCGACUCUUCGGAGGUCGAGUGCGAUCAGAGUACUAAUUAUAGCACCGAUAAUUCGGUAAGAGCUAAGAUGCUAAACUCAUAAUCUAAUUUGGAAAUUAAA .(((((((((....)).))))(((((.......))))).(((.(((((((((....)))))....)))).)))......)))...................... ( -24.90) >DroPer_CAF1 17489 99 + 1 AGAGCGACUCUUCUGAAGUUGAGUGCGAUCAGAGUACAAAUUAUAGCACCGAUAAUUCGGUAAGACUAGAGAUUUAAGAUUAGCAAA-GAA----UAGAAAAGA .......((.((((...(((((((((.......))))(((((.(((((((((....)))))..).)))..)))))....)))))..)-)))----.))...... ( -18.50) >consensus AGAGCGACUCUUCUGAGGUUGAGUGCGAUCAGAGUACAAACUAUAGCACCGAUAAUUCGGUAAGAGCUUACAUGCAAGACUCUUAAUCGAA____GACAAAAAA .......((((((((((((((.((((......(((....)))...))))))))..))))).)))))...................................... (-15.34 = -14.90 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:28 2006