Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,405,972 – 4,406,066 |
Length | 94 |
Max. P | 0.965162 |
Location | 4,405,972 – 4,406,066 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 79.22 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -18.24 |
Energy contribution | -18.27 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.19 |
Mean z-score | -2.69 |
Structure conservation index | 0.62 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965162 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4405972 94 + 20766785 UUUGUGCAUCAA--GUCG--UUCACAU-AACCGGCUUUUCCUCCCGCAGGUUCCAAAAACUCAUCUGGUCCCCAGUGGGACCACACCCCAGUGGCCUGA ..........((--((((--.......-...)))))).........(((((..............(((((((....)))))))(((....)))))))). ( -23.90) >DroSec_CAF1 15940 96 + 1 UUUGUGAAUCAAGAGUCG--UUCACAA-AACCGGCUUUUCAACCCGCAGGUUCCAAAAACUCAUCUGGAGCCCAGUGGGACCACACCCCAGUGGCCUGA (((((((((........)--)))))))-)...(((.......(((((.(((((((..........)))))))..)))))..(((......))))))... ( -32.70) >DroSim_CAF1 15810 96 + 1 UUUGUGGAUCAAGAGUCG--UUCACAA-AACCGUCUUUUCAACCCGCAGGUUCCAAAAACUCAUCUGGAGCCCAGUGGGACCACACCCCAGUGGCCUGA (((((((((........)--)))))))-).............(((((.(((((((..........)))))))..))))).((((......))))..... ( -30.00) >DroEre_CAF1 16048 96 + 1 UUUCAGCAUCAAGAGGCC--UUUAUAA-AACUGGCCUUUCCUUCCGCAGGUUCCAAAAACUUAUCUGGAGCCCUGUGGGACCACACCCAAGUGGCCUGA ..((((.....(((((((--.......-....)))))))..((((((((((((((..........))))).)))))))))((((......)))).)))) ( -34.60) >DroYak_CAF1 15980 96 + 1 UUUCAGUACCAAGAGUCC--UUUACAA-AACAGGCCUUUCCUCCCGCAGGUUCCAAAAACUUAUCUGGAGCCCCGUGGGACCACACCCAAGUGGACUAA ....(((....((((.((--(......-...))).))))..((((((.(((((((..........)))))))..))))))((((......))))))).. ( -27.80) >DroPer_CAF1 15763 95 + 1 UUCAUGCAUGGG--AUCGGAUUCAAUUUAAUC--CCUUUUCGUUUGCAGGUUCCAGAAACUUAUAUGGAGCCCCAUAGGUCCUCACCCAAGCGGCCUCA .....((..(((--((..(((...)))..)))--))....((((((..(((((((..........))))))).....(((....))))))))))).... ( -26.10) >consensus UUUGUGCAUCAAGAGUCG__UUCACAA_AACCGGCCUUUCCUCCCGCAGGUUCCAAAAACUCAUCUGGAGCCCAGUGGGACCACACCCAAGUGGCCUGA ..........................................(((((.(((((((..........)))))))..))))).((((......))))..... (-18.24 = -18.27 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:26 2006