Locus 1093

Sequence ID 2R_DroMel_CAF1
Location 4,400,005 – 4,400,125
Length 120
Max. P 0.897950
window1938

overview

Window 8

Location 4,400,005 – 4,400,125
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 81.45
Mean single sequence MFE -23.29
Consensus MFE -16.76
Energy contribution -17.32
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -2.03
Structure conservation index 0.72
SVM decision value 1.00
SVM RNA-class probability 0.897950
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4400005 120 + 20766785
UAAGACUUGUCAUCUCAAAUAUCAAGGCUGGUUAGUCGAAUUAUUUACAAGAAUAGAGCAAAAGCUUGUAAAUUUUCGGAAUACCUUUCCAUAAUGUAAAAACAGUCAUUUGAUUAACAU
..((.((((.............)))).)).(((((((((((.(((((((((.............)))))))))....((((.....)))).................))))))))))).. ( -22.44)
>DroSec_CAF1 9986 120 + 1
UAAGACUUACCGUCUCAAAUAUCAAAGAUGGUUAGUCGAAUUAUUUACAAGAAGAGAGCAAAAGCUUGUAAAUUUUCGGAAUACCUUUCCAAAAUGUAAAAACAGUCAUUUGAUUAACAU
...((((.(((((((..........))))))).))))......((((((.(((((..((((....))))...)))))((((.....))))....))))))...((((....))))..... ( -27.40)
>DroSim_CAF1 9886 101 + 1
-------------------UAUCAAAGUUGGUUAGUCGAAUUAUUUACAAGAAGAGAGCAAAAGCUUGUAAAUUUUCGGAAUACCUUUCCAUAAUGUAAAAACAGUCAUUUGAUUAACAU
-------------------...........(((((((((((.(((((((.(((((..((((....))))...)))))((((.....))))....))))).....)).))))))))))).. ( -21.40)
>DroEre_CAF1 10011 112 + 1
UGAGAU---AAGUCCCAGAUAUCAAUGCUGGUUAGUCGAAUUAUUUACAAG---AGAGAAAAUGCUUGUAAAUUUUUUGAACAC--CUUCAUAUUGUAAAAACAGUCAUUUGAUUUACAU
.....(---(((((..........(((..(((...(((((..(((((((((---..........)))))))))..)))))..))--)..)))(((((....))))).....))))))... ( -21.90)
>consensus
UAAGAC____CGUCUCAAAUAUCAAAGCUGGUUAGUCGAAUUAUUUACAAGAAGAGAGCAAAAGCUUGUAAAUUUUCGGAAUACCUUUCCAUAAUGUAAAAACAGUCAUUUGAUUAACAU
..............................(((((((((((.(((((((((.............)))))))))....((((.....)))).................))))))))))).. (-16.76 = -17.32 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:24 2006