Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,353,479 – 1,353,593 |
Length | 114 |
Max. P | 0.724731 |
Location | 1,353,479 – 1,353,593 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.57 |
Mean single sequence MFE | -31.64 |
Consensus MFE | -24.62 |
Energy contribution | -25.70 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.72 |
Structure conservation index | 0.78 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1353479 114 - 20766785 A------GUCGGGGUUUUCCAUAAAUUUGUAUUUAUUUGCUCGCACGCGUGAGUAAGUUUAUUUAAAUUUUUAUGCUGAGAGCCGUAAAAAACGGAGAGCACUUGAGACUCGGACAAAGU .------(((.(((((((....(((((((.((..((((((((((....))))))))))..)).)))))))...((((.....((((.....))))..))))...))))))).)))..... ( -34.00) >DroSec_CAF1 71601 103 - 1 GGCCGGGGUCGGGGUUUUCCAUAAAUUUGUAUUUAUUUGCUCGCACGCGUGAGUGAGUUUAUUUAAAUUUUUAUGCUGAG-----------------AGCACUUGAGACUCGGACAAAGU ..(((((.(((((((((((((((((((((.((..(((..(((((....)))))..)))..)).)))))..)))))..)))-----------------))).)))))..)))))....... ( -33.50) >DroSim_CAF1 49768 120 - 1 GGCCGGGGUCGGGGUUUUCCAUAAAUUUGUAUUUAUUUGCUCGCACGCGUGAGUGAGUUUAUUUAAAUUUUUAUGCUGAGAGCCGUAAAAAACGGAGAGCACUUGAGACUCGGACAAUGU ..(((((.((((((((((((.....((((.((..(((..(((((....)))))..)))..)).))))((((((((.(....).))))))))..))))))).)))))..)))))....... ( -39.60) >DroEre_CAF1 52226 114 - 1 AG------GCGGGGUUUUCCAUAAAUUUGUAUUUAUUUGCUCGCACGCGUGAGUGAGUUUAUUUAAAUUUUUAUGCUGGGAGCCGUAAAAAGCGGAGAGCACUUGAGACUUGGACAAAGU ..------.(((((((((((((((((....))))))..((((.((.((((((..((((((....)))))))))))))).))))..........))))))).))))..((((.....)))) ( -29.70) >DroYak_CAF1 39480 114 - 1 AG------GCGGGGUUUUCCAUAAAUUUGUAUUUAUUUGCUCGCACGCGUGACUGCGUUUAUUUAAAUUUUUAUGCUGAAAGCCGUAAAAAACAGAAAGCACUUGAGACUUGGACAAAGU ..------((..(((((((((((((....((..((..(((((((....))))..)))..))..))....))))))..)))))))((.....)).....)).......((((.....)))) ( -21.40) >consensus AG_____GUCGGGGUUUUCCAUAAAUUUGUAUUUAUUUGCUCGCACGCGUGAGUGAGUUUAUUUAAAUUUUUAUGCUGAGAGCCGUAAAAAACGGAGAGCACUUGAGACUCGGACAAAGU .......(((.(((((((....(((((((.((..((((((((((....))))))))))..)).)))))))...((((.....((((.....))))..))))...))))))).)))..... (-24.62 = -25.70 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:36 2006