Locus 1086

Sequence ID 2R_DroMel_CAF1
Location 4,378,822 – 4,378,929
Length 107
Max. P 0.500000
window1921

overview

Window 1

Location 4,378,822 – 4,378,929
Length 107
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.59
Mean single sequence MFE -30.98
Consensus MFE -23.08
Energy contribution -23.97
Covariance contribution 0.89
Combinations/Pair 1.16
Mean z-score -1.32
Structure conservation index 0.74
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4378822 107 - 20766785
UCUUGCUGGCCAAGUGGAAGCGAUCAAG-UACUCACCAUAUCACUGUUGUGGUGACGCAGCAAAAUGGCAUUGCCAUAGAGCAAUGUCCUGUGUCCCGAUCCGGUGCC
..(((((..((....)).))))).....-............(((((...(((.(((((((......((((((((......))))))))))))))))))...))))).. ( -35.10)
>DroSec_CAF1 1152 95 - 1
UCUUGCCGGU------------AUUCAG-UACUCACCAUAUCACUGUUGUGGUGGCGCAGCAAAAUGGCAUUGCCAUAGAGCAAUGUCCUGUGUCCCGAUCCGGUGCC
....(((((.------------..((..-....(((((((.......)))))))((((((......((((((((......))))))))))))))...)).)))))... ( -33.80)
>DroSim_CAF1 1154 95 - 1
UCUUGCCGGU------------ACUCAG-UACUCACCAUAUCACUGUUGUGAUGUCGCAGCAAAAUGGCAUUGCCAUAGAGCAAUGUCCUGUGUCCCGAUCCUGUGCC
......(((.------------((.(((-...............(((((((....)))))))....((((((((......))))))))))).)).))).......... ( -27.10)
>DroEre_CAF1 1173 107 - 1
UCAUGCCGGUCAAGUGAAAGUGUUCAAG-UACUCACCAUAUCACUGUUGUGAUGGCGCAACAAAAUGGCAUUGCCGUAGAGCAAUGUCCUGUGUCCCGAUCCGGUGCC
....(((((((..((((..(((......-))))))).....((((((((((....)))))))....((((((((......))))))))..)))....)).)))))... ( -31.60)
>DroYak_CAF1 1147 107 - 1
UCAUGCCCUUCAAGUGAAACCGAUCAAG-UACUCACCAUAUCACUGUUGUGAUGGCGCAGCAAAAUGGCAUUGCCGUAGAGCAAUGUCCUGUGUCCCGAUCCGGUGCC
((((.........)))).(((((((...-..........(((((....)))))(((((((......((((((((......)))))))))))))))..))).))))... ( -30.80)
>DroAna_CAF1 5577 93 - 1
UUUUG---GU------------UUAAAGCCACUCACCAUGUCACUAUUGUGAUGACGGAGCAGAAUGGCAUUGCCGUAGAGCAAUGUCCUGUGUCCGGAUCCAGUUCC
...((---((------------.....))))....((..(((((....)))))...(((((((...((((((((......)))))))))))).))))).......... ( -27.50)
>consensus
UCUUGCCGGU____________AUCAAG_UACUCACCAUAUCACUGUUGUGAUGGCGCAGCAAAAUGGCAUUGCCAUAGAGCAAUGUCCUGUGUCCCGAUCCGGUGCC
....(((((..............................(((((....)))))(((((((......((((((((......))))))))))))))).....)))))... (-23.08 = -23.97 +   0.89) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:07 2006