Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,376,420 – 4,376,539 |
Length | 119 |
Max. P | 0.575301 |
Location | 4,376,420 – 4,376,539 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -44.26 |
Consensus MFE | -42.40 |
Energy contribution | -42.52 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.13 |
Structure conservation index | 0.96 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4376420 119 + 20766785 GUGUGCAUCGCCCGGCUGAUGUUCCAUGCCCAAAAGGAUGCAGAUGGAGCUGGCGAGUCGAAUGUGUCGGCAAAUGCCAAUUGGUAUUGCGGUGGCUUGCCGGUCGGAAUUGUUGCCA-A .((.(((.((.((((((...(((((((((((....))..)))..)))))).((((((((((.....)).((((.((((....))))))))...))))))))))))))...)).)))))-. ( -44.30) >DroSec_CAF1 47067 120 + 1 GUGUGCAUCGCCCGGCUGAUGCUCCAUGCCCAAAAGGAUGCAGAUGGAGCUGGCGAGUCGAAUGUGUCGGCAAAUGCCAAUUGGUAUUGCGGUGGCUUGCCGGUCGGAAUUGUUGCCAAA .((.(((.((.((((((...(((((((((((....))..)))..)))))).((((((((((.....)).((((.((((....))))))))...))))))))))))))...)).))))).. ( -46.70) >DroSim_CAF1 47680 120 + 1 GUGUGCAUCGCCCGGCUGAUGCUCCAUGCCCAAAAGGAUGCAGAUGGAGCUGGCGAGUCGAAUGUGUCGGCAAAUGCCAAUUGGUAUUGCGGUGGCUUGCCGGUCGGAAUUGUUGCCAAA .((.(((.((.((((((...(((((((((((....))..)))..)))))).((((((((((.....)).((((.((((....))))))))...))))))))))))))...)).))))).. ( -46.70) >DroEre_CAF1 43702 120 + 1 GUGUGCAUCGCCCGGCUGAUUCUCCAUGCCCACAAGGAUGCAGAUGGAGCUGGCGAGUCGAAUGUGUCGGCAAAUGCCAAUUGGUAUUGCGGUGGCUUGCCGGUCGGAAUUGUUGCCAAA .((.(((.((.((((((....((((((((((....))..)))..)))))..((((((((((.....)).((((.((((....))))))))...))))))))))))))...)).))))).. ( -42.60) >DroYak_CAF1 45521 120 + 1 GUGUGCAUCGCCCGGCUGAUGCUCUACGCCCAAAAGGAUGCAGAUGGAGCUGGCGAGUCGAAUGUGUCGGCAAAUGCCAAUUGGUAUUACGGUGGCUUGUCGGUCGGAAUUGUUGCCAAA .((.(((.((.(((((((((..(((.((.((....)).)).)))..((((((.((.(((((.....))))).((((((....)))))).)).)))))))))))))))...)).))))).. ( -41.00) >consensus GUGUGCAUCGCCCGGCUGAUGCUCCAUGCCCAAAAGGAUGCAGAUGGAGCUGGCGAGUCGAAUGUGUCGGCAAAUGCCAAUUGGUAUUGCGGUGGCUUGCCGGUCGGAAUUGUUGCCAAA .((.(((.((.((((((...(((((((((((....))..)))..)))))).((((((((((.....)).((((.((((....))))))))...))))))))))))))...)).))))).. (-42.40 = -42.52 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:05 2006