Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,375,358 – 4,375,452 |
Length | 94 |
Max. P | 0.984490 |
Location | 4,375,358 – 4,375,452 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 97.66 |
Mean single sequence MFE | -20.28 |
Consensus MFE | -20.34 |
Energy contribution | -20.18 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.59 |
Structure conservation index | 1.00 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984490 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4375358 94 + 20766785 GCCUCGUUUCCCCGGCUACGCAAUACAGCUGUAUAUGUAUGUAAUGCAUAUUUAUAGGCGCCCCUAACUUUUGUUUAUGGCACACAAUAAAUAC (((.........(((((.........)))))((((.(((((.....))))).)))))))(((...(((....)))...)))............. ( -20.20) >DroSec_CAF1 45996 94 + 1 GCCUCGUUUCCCCGGCUACGCAAUACAGCUGUAUAUGUAUGUAAUGCAUAUUUAUAGGCGCCCCUAACUUUUGUUUAUGGCACACAAUAAAUAC (((.........(((((.........)))))((((.(((((.....))))).)))))))(((...(((....)))...)))............. ( -20.20) >DroSim_CAF1 46216 94 + 1 GCCUCGUUUCCCCGGCUACGCAAUACAGCUGUAUAUGUAUGUAAUGCAUAUUUAUAGGCGCCCCUAACUUUUGUUUAUGGCACACAAUAAAUAC (((.........(((((.........)))))((((.(((((.....))))).)))))))(((...(((....)))...)))............. ( -20.20) >DroEre_CAF1 42638 94 + 1 GCCUCGUUUCCCCGGCUACGCCAUGCAGCUGUAUAUAUAUGUAAUGCAUAUUUAUAGGCGCCCCUAACUUUUGUUUAUGGCACACAAUAAAUAC (((.........(((((.(.....).)))))((((.(((((.....))))).)))))))(((...(((....)))...)))............. ( -20.60) >DroYak_CAF1 44480 94 + 1 GCCUCGUUUUCCCGGCUACUCCAUACAGCUGUAUAUGUAUGUAAUGCAUAUUUAUAGGCGCCCCUAACUUUUGUUUAUGGCACACAAUAAAUAC (((.........(((((.........)))))((((.(((((.....))))).)))))))(((...(((....)))...)))............. ( -20.20) >consensus GCCUCGUUUCCCCGGCUACGCAAUACAGCUGUAUAUGUAUGUAAUGCAUAUUUAUAGGCGCCCCUAACUUUUGUUUAUGGCACACAAUAAAUAC (((.........(((((.........)))))((((.(((((.....))))).)))))))(((...(((....)))...)))............. (-20.34 = -20.18 + -0.16)
Location | 4,375,358 – 4,375,452 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 97.66 |
Mean single sequence MFE | -25.38 |
Consensus MFE | -21.98 |
Energy contribution | -22.78 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.87 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4375358 94 - 20766785 GUAUUUAUUGUGUGCCAUAAACAAAAGUUAGGGGCGCCUAUAAAUAUGCAUUACAUACAUAUACAGCUGUAUUGCGUAGCCGGGGAAACGAGGC ((((((((.(.(((((...(((....)))...)))))).))))))))(((.((((............)))).)))...(((..(....)..))) ( -26.50) >DroSec_CAF1 45996 94 - 1 GUAUUUAUUGUGUGCCAUAAACAAAAGUUAGGGGCGCCUAUAAAUAUGCAUUACAUACAUAUACAGCUGUAUUGCGUAGCCGGGGAAACGAGGC ((((((((.(.(((((...(((....)))...)))))).))))))))(((.((((............)))).)))...(((..(....)..))) ( -26.50) >DroSim_CAF1 46216 94 - 1 GUAUUUAUUGUGUGCCAUAAACAAAAGUUAGGGGCGCCUAUAAAUAUGCAUUACAUACAUAUACAGCUGUAUUGCGUAGCCGGGGAAACGAGGC ((((((((.(.(((((...(((....)))...)))))).))))))))(((.((((............)))).)))...(((..(....)..))) ( -26.50) >DroEre_CAF1 42638 94 - 1 GUAUUUAUUGUGUGCCAUAAACAAAAGUUAGGGGCGCCUAUAAAUAUGCAUUACAUAUAUAUACAGCUGCAUGGCGUAGCCGGGGAAACGAGGC ((((((((.(.(((((...(((....)))...)))))).))))))))..............(((.(((....))))))(((..(....)..))) ( -24.60) >DroYak_CAF1 44480 94 - 1 GUAUUUAUUGUGUGCCAUAAACAAAAGUUAGGGGCGCCUAUAAAUAUGCAUUACAUACAUAUACAGCUGUAUGGAGUAGCCGGGAAAACGAGGC ((((((((.(.(((((...(((....)))...)))))).))))))))......((((((........)))))).....(((.(.....)..))) ( -22.80) >consensus GUAUUUAUUGUGUGCCAUAAACAAAAGUUAGGGGCGCCUAUAAAUAUGCAUUACAUACAUAUACAGCUGUAUUGCGUAGCCGGGGAAACGAGGC ((((((((.(.(((((...(((....)))...)))))).))))))))(((.((((............)))).)))...(((..(....)..))) (-21.98 = -22.78 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:01 2006