Locus 1077

Sequence ID 2R_DroMel_CAF1
Location 4,370,993 – 4,371,083
Length 90
Max. P 0.999855
window1899

overview

Window 9

Location 4,370,993 – 4,371,083
Length 90
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 93.29
Mean single sequence MFE -26.22
Consensus MFE -25.81
Energy contribution -26.12
Covariance contribution 0.31
Combinations/Pair 1.07
Mean z-score -2.21
Structure conservation index 0.98
SVM decision value 4.27
SVM RNA-class probability 0.999855
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4370993 90 - 20766785
CUAUUCAUUGGCUUUUUCUUCCUGCCAACUGACUCAGCGUCAUUGGCUUGGAUGCG-----AUGCGUUCAGGCGGAACAACUUGAGAUAUUUUCU
....((((((((...........))))).)))(((((.((..((.((((((((((.-----..)))))))))).))...)))))))......... ( -26.50)
>DroSec_CAF1 41520 90 - 1
CUAUUCAUUGGCUUUUUCUUCCUGCCAACUGACUCAGCGUCAUUGGCUUGGAUGCG-----AUGCGUUCAGGCGGAACAACUUGAGAUAUUUUCU
....((((((((...........))))).)))(((((.((..((.((((((((((.-----..)))))))))).))...)))))))......... ( -26.50)
>DroSim_CAF1 41754 90 - 1
CUAUUCAUUGGCUUUUUCUUCCUGCCAACUGACUCAGCGUCAUUGGCUUGGAUGCG-----AUGCGUUCAGGCGGAACAACUUGAGAUAUUUUCU
....((((((((...........))))).)))(((((.((..((.((((((((((.-----..)))))))))).))...)))))))......... ( -26.50)
>DroEre_CAF1 38308 89 - 1
CUAUUCAUUGGCUU-UUCUUCCUGCCAACUGACUCAACGCCAUUGGCUUGGAUGCG-----AUGCGUUCAGGCGGAACAACUUGAGAUAUUUUCU
....((((((((..-........))))).)))(((((.....((.((((((((((.-----..)))))))))).)).....)))))......... ( -26.20)
>DroYak_CAF1 40077 89 - 1
CUAUUCAUUGGCUU-UUCUUCCUGCCAACUGACUCAACGUCAUUGGCUUGGAUGCG-----AUGCGUUCAGGCGGAACAACUUGAGAUAUUUUCU
....((((((((..-........))))).)))(((((.((..((.((((((((((.-----..)))))))))).))...)))))))......... ( -26.90)
>DroAna_CAF1 48217 91 - 1
---UCUUUUGGCUU-UUCUUCUUGCCAACUGAGUCAGCGUCAUUGGCUUGGAUGCGAUGCGAUGCGUUCAGGCGGAAUAACUUGAGAUAUUUUCU
---((..(((((..-........)))))..)).((((.((..((.(((((((((((......))))))))))).))...)))))).......... ( -24.70)
>consensus
CUAUUCAUUGGCUU_UUCUUCCUGCCAACUGACUCAGCGUCAUUGGCUUGGAUGCG_____AUGCGUUCAGGCGGAACAACUUGAGAUAUUUUCU
....((((((((...........))))).)))(((((.((..((.(((((((((((......))))))))))).))...)))))))......... (-25.81 = -26.12 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:48 2006