| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,370,614 – 4,370,704 |
| Length | 90 |
| Max. P | 0.566342 |
| Location | 4,370,614 – 4,370,704 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 85.87 |
| Mean single sequence MFE | -15.77 |
| Consensus MFE | -12.19 |
| Energy contribution | -12.63 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4370614 90 + 20766785 AAAUAAUUCAAACUUAAUCAGCUUCCAACGACGUGGAA---------AUCAAAAACAUGCCUAUACCAUGCAUGAUGAGUAUGAAUAAUCUAUUGUAUG .....(((((.(((((......(((((......)))))---------........(((((.........))))).))))).)))))............. ( -16.60) >DroSec_CAF1 41155 94 + 1 AAAUAAUUCAAACUUAAUCAGCUUCCAACGAAAUCGAAAACAUGUCUAUCGAAAACAUGUCUAUACCAUGCAUGAUGAGUAUGAAUAAUCU-----AUG .....(((((.(((((.(((((......((....))...((((((.........)))))).........)).)))))))).))))).....-----... ( -15.90) >DroSim_CAF1 41397 85 + 1 AAAUAAUUCAAACUUAAUCAGCUUCCAACGACGUGGAA---------AUCGAAAACAUGCCUAUACCAUGCUUGAUGAGUAUGAAUAAUCU-----AUG .....(((((.(((((.((((.(((((......)))))---------........((((.......)))).))))))))).))))).....-----... ( -14.80) >consensus AAAUAAUUCAAACUUAAUCAGCUUCCAACGACGUGGAA_________AUCGAAAACAUGCCUAUACCAUGCAUGAUGAGUAUGAAUAAUCU_____AUG .....(((((.(((((......(((((......))))).................(((((.........))))).))))).)))))............. (-12.19 = -12.63 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:47 2006