Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,368,647 – 4,368,746 |
Length | 99 |
Max. P | 0.999426 |
Location | 4,368,647 – 4,368,746 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 96.36 |
Mean single sequence MFE | -28.55 |
Consensus MFE | -26.27 |
Energy contribution | -26.80 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.04 |
Mean z-score | -1.62 |
Structure conservation index | 0.92 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4368647 99 + 20766785 AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGCCAUGAUGGGCCUUCAAUUAAUAGCCAUUCGGAUGGGGCCAGUAAGU .(((.(((((((((....(((......))).)))).))))).)))...((((((.(((..(((............)))..))).....))))))..... ( -29.30) >DroSec_CAF1 39134 99 + 1 AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGCCAUGAUGGGCCUUCAAUUAAUAGCCAUCCGGAUGGGGCCAGUAAGU .(((.(((((((((....(((......))).)))).))))).)))...((((((.(((.......)))........((((....))))))))))..... ( -29.80) >DroSim_CAF1 39369 99 + 1 AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGCCAUGAUGGGCCUUCAAUUAAUAGCCAUCCGGAUGGGGCCAGUAAGU .(((.(((((((((....(((......))).)))).))))).)))...((((((.(((.......)))........((((....))))))))))..... ( -29.80) >DroEre_CAF1 35934 99 + 1 AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGCCAUGAUGGGCCUUCAAUUAAUAGCCAUCCGGAUGGGGCCAGUAAGU .(((.(((((((((....(((......))).)))).))))).)))...((((((.(((.......)))........((((....))))))))))..... ( -29.80) >DroYak_CAF1 36976 99 + 1 AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGCCAUGAUGGGCCUUCAAUUAAUAGCCAUCCGGAUGGGGCCAGUAAGU .(((.(((((((((....(((......))).)))).))))).)))...((((((.(((.......)))........((((....))))))))))..... ( -29.80) >DroAna_CAF1 46318 94 + 1 AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGUCGUGAUGGGCCUUCAAUUAAUAGC----UGGAUU-GGCAAGUAAGU .(((.(((((((((....(((......))).)))).))))).))).(((.((((......))))((((.........----))))..-)))........ ( -22.80) >consensus AUCAGUUGUUGCCGCAAAUUGAUUCAACAAACGGCAAACAAGUGAAGCCUGGCCAUGAUGGGCCUUCAAUUAAUAGCCAUCCGGAUGGGGCCAGUAAGU .(((.(((((((((....(((......))).)))).))))).))).(((.((((......))))............((((....)))))))........ (-26.27 = -26.80 + 0.53)
Location | 4,368,647 – 4,368,746 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 96.36 |
Mean single sequence MFE | -31.33 |
Consensus MFE | -28.27 |
Energy contribution | -29.43 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.00 |
Mean z-score | -2.92 |
Structure conservation index | 0.90 |
SVM decision value | 3.59 |
SVM RNA-class probability | 0.999426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4368647 99 - 20766785 ACUUACUGGCCCCAUCCGAAUGGCUAUUAAUUGAAGGCCCAUCAUGGCCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU .....((((((......((..((((.((....)).))))..))..))))))...(((.(((((.(((((..((((...))))..)))))))))).))). ( -31.40) >DroSec_CAF1 39134 99 - 1 ACUUACUGGCCCCAUCCGGAUGGCUAUUAAUUGAAGGCCCAUCAUGGCCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU .....((((((.......(((((((.((....)).)).)))))..))))))...(((.(((((.(((((..((((...))))..)))))))))).))). ( -34.00) >DroSim_CAF1 39369 99 - 1 ACUUACUGGCCCCAUCCGGAUGGCUAUUAAUUGAAGGCCCAUCAUGGCCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU .....((((((.......(((((((.((....)).)).)))))..))))))...(((.(((((.(((((..((((...))))..)))))))))).))). ( -34.00) >DroEre_CAF1 35934 99 - 1 ACUUACUGGCCCCAUCCGGAUGGCUAUUAAUUGAAGGCCCAUCAUGGCCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU .....((((((.......(((((((.((....)).)).)))))..))))))...(((.(((((.(((((..((((...))))..)))))))))).))). ( -34.00) >DroYak_CAF1 36976 99 - 1 ACUUACUGGCCCCAUCCGGAUGGCUAUUAAUUGAAGGCCCAUCAUGGCCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU .....((((((.......(((((((.((....)).)).)))))..))))))...(((.(((((.(((((..((((...))))..)))))))))).))). ( -34.00) >DroAna_CAF1 46318 94 - 1 ACUUACUUGCC-AAUCCA----GCUAUUAAUUGAAGGCCCAUCACGACCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU ...........-....((----(........(((((.((...........))))))).(((((.(((((..((((...))))..))))))))))))).. ( -20.60) >consensus ACUUACUGGCCCCAUCCGGAUGGCUAUUAAUUGAAGGCCCAUCAUGGCCAGGCUUCACUUGUUUGCCGUUUGUUGAAUCAAUUUGCGGCAACAACUGAU .....((((((.......(((((((.((....)).)).)))))..))))))...(((.(((((.(((((..((((...))))..)))))))))).))). (-28.27 = -29.43 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:46 2006