Locus 1074

Sequence ID 2R_DroMel_CAF1
Location 4,367,417 – 4,367,507
Length 90
Max. P 0.530949
window1895

overview

Window 5

Location 4,367,417 – 4,367,507
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 92.42
Mean single sequence MFE -13.30
Consensus MFE -10.90
Energy contribution -11.23
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.82
SVM decision value -0.01
SVM RNA-class probability 0.530949
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4367417 90 + 20766785
GCUAAUCUUAAAUGUUAAAUGCUAAUGAAAACCGAAUUCGAAAUCGAAAUAAAAAUCGAAUUCGAAAUCGAACACGAAAUAGAAACUUAU
................................(((.((((((.((((........)))).)))))).))).................... ( -13.70)
>DroSec_CAF1 37930 84 + 1
GCUAAUCUUAAAUGUUAAAUGCAAAUGGAAA------UCGAAAUCGAUAUAUAAAUCGAAUUCGAAAUCGAACACGAAAUAGAAACUUAU
.(((.(((....(((.....)))...)))..------(((((.(((((......))))).)))))..(((....)))..)))........ ( -13.10)
>DroSim_CAF1 38164 84 + 1
GCUAAUCUUAAAUGUUAAAUGCAAAUGGAAA------UCGAAAUCGAUAUAUAAAUCGAAUUCGAAAUCGAACACGAAAUAGAAACUUAU
.(((.(((....(((.....)))...)))..------(((((.(((((......))))).)))))..(((....)))..)))........ ( -13.10)
>consensus
GCUAAUCUUAAAUGUUAAAUGCAAAUGGAAA______UCGAAAUCGAUAUAUAAAUCGAAUUCGAAAUCGAACACGAAAUAGAAACUUAU
.(((.................................(((((.(((((......))))).)))))..(((....)))..)))........ (-10.90 = -11.23 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:44 2006