Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,365,952 – 4,366,053 |
Length | 101 |
Max. P | 0.718165 |
Location | 4,365,952 – 4,366,053 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 90.89 |
Mean single sequence MFE | -21.41 |
Consensus MFE | -17.35 |
Energy contribution | -17.86 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 0.81 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718165 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4365952 101 - 20766785 GCUUCUCCUGCUCCGCCAUUCUUUGUAUCCUUCUCCAUCUAUGCCCGAAAUCAGGGCAUUUAUUCAUUUGCGAUAAUCCACUAAGGACUAGCAGCUGCAAU ((.....(((((...((........(((((..........((((((.......))))))..........).)))).........))...)))))..))... ( -21.58) >DroSec_CAF1 36485 99 - 1 --UCCUCCUGCUACGCCAUUCUUUGUAUCCUCCUCCAUCUAUGCCCGAAAUCAGGGCAUUUAUUCAUUUGCGAUAAUCCACUGAGGACUAGCAGCUGCAAU --.....((((((..((........(((((..........((((((.......))))))..........).)))).........))..))))))....... ( -21.68) >DroSim_CAF1 36709 101 - 1 GCUCCUCCUGCUACGCCAUUCUUUGUAUCCGGCUCCAUCUAUGCCCGAAAUCAGGGCAUUUAUUCAUUUGCGAUAAUCCACUGAGGACUAGCAGCUGCAAU ((.....((((((..((........(((((((........((((((.......))))))........))).)))).........))..))))))..))... ( -23.82) >DroYak_CAF1 34484 95 - 1 ------CCUGCUCCUCCAUUCUUUGUAUCCUGCUUCAUCUAUGCCCGAAAUCAGGGCAUUUAUUCAUUUGCGAUAAUCCACUGAGAGCCAGCAUCUGCAAU ------...((((.((.........(((((..........((((((.......))))))..........).)))).......))))))..((....))... ( -18.54) >consensus __UCCUCCUGCUACGCCAUUCUUUGUAUCCUGCUCCAUCUAUGCCCGAAAUCAGGGCAUUUAUUCAUUUGCGAUAAUCCACUGAGGACUAGCAGCUGCAAU .......(((((...((........(((((..........((((((.......))))))..........).)))).........))...)))))....... (-17.35 = -17.86 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:43 2006