Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,361,682 – 4,361,780 |
Length | 98 |
Max. P | 0.892331 |
Location | 4,361,682 – 4,361,780 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 87.68 |
Mean single sequence MFE | -24.67 |
Consensus MFE | -20.48 |
Energy contribution | -21.07 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.09 |
Mean z-score | -2.51 |
Structure conservation index | 0.83 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892331 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4361682 98 + 20766785 --AGCCCACCCACUCAUCCAUCCGUUGCGGUGUUUUUG-UCCAACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUGGUUGGCUU --....((((((..(........).)).)))).....(-.((((((((((((........)))))((((((.........)))))).....)))))))).. ( -26.50) >DroSim_CAF1 32464 98 + 1 --AGCCCACCCACUCAUCCAUCCGUUGCGGUGUUUUUG-UCCAACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUGGUUGGCUU --....((((((..(........).)).)))).....(-.((((((((((((........)))))((((((.........)))))).....)))))))).. ( -26.50) >DroEre_CAF1 29135 98 + 1 --AGCACACCCACUCAUCCAUCCGUUGCGGUGUUUUUG-UCCAACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUGGUUGGCUU --...(((((((..(........).)).)))))....(-.((((((((((((........)))))((((((.........)))))).....)))))))).. ( -27.70) >DroWil_CAF1 49085 79 + 1 -----------------CCGAGCGUUUGUGUGUGUGUAUUUCGACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUG-----CCU -----------------....(((...((..................(((((........)))))((((((.........)))))).))..))-----).. ( -14.30) >DroYak_CAF1 30352 100 + 1 CCAGCCCACCCACUCAUCCAUCCGUUGCGGUGUUUUUG-UCCAACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUGGUUGGCUU ......((((((..(........).)).)))).....(-.((((((((((((........)))))((((((.........)))))).....)))))))).. ( -26.50) >DroAna_CAF1 38873 98 + 1 --AGUCCACCCACUCAUCCAUCCGUUGCGGUGUUUUUG-UCCAACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUGGUUGGCUU --....((((((..(........).)).)))).....(-.((((((((((((........)))))((((((.........)))))).....)))))))).. ( -26.50) >consensus __AGCCCACCCACUCAUCCAUCCGUUGCGGUGUUUUUG_UCCAACCAGCUUGUAACUAUUUAAGCGGCAAUUUGUAUUUUAUUGCCAACUUUGGUUGGCUU ..................((((......))))........((((((((((((........)))))((((((.........)))))).....)))))))... (-20.48 = -21.07 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:38 2006