Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,358,237 – 4,358,342 |
Length | 105 |
Max. P | 0.944670 |
Location | 4,358,237 – 4,358,342 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 95.81 |
Mean single sequence MFE | -31.64 |
Consensus MFE | -26.18 |
Energy contribution | -26.82 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -2.03 |
Structure conservation index | 0.83 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4358237 105 + 20766785 UUCUCCAUUUGCGGCUGGCCAGCCAAACGUCGUGCUCUGCUUAUGGUCGCAAUCAAAGCUUAAGCCAUAGCUACGUCCAUAUAAAUGCACGUAUAUGUGGCAAAA ........(((((((((((.((((.......).)))..)))...))))))))...........((((((..(((((.(((....))).)))))..)))))).... ( -30.10) >DroSec_CAF1 28811 105 + 1 UUCUCCAUUUGCGGCUGGCCAGCCAAACGUCGUGCUCUGCUUAUGGUCGCAAUCAAAGCUUAAGCCAUAGCUACGUCCAUAUAAAUGCACGUAUAUGUGGCAAAA ........(((((((((((.((((.......).)))..)))...))))))))...........((((((..(((((.(((....))).)))))..)))))).... ( -30.10) >DroSim_CAF1 29072 105 + 1 UUCUCCAUUUGCGGCUGGCCAGCCAAACGUCGUGCUCUGCUUAUGGUCGCAAUCAAAGCUUAAGCCAUAGCUACGUCCAUAUAAAUGCACGUAUAUGUGGCAAAA ........(((((((((((.((((.......).)))..)))...))))))))...........((((((..(((((.(((....))).)))))..)))))).... ( -30.10) >DroEre_CAF1 25726 104 + 1 UUCCCCAUUUGCGGCUGGCCAGCCAAACGGCGUGCUCCGCUUUUGGUCGCAAUCAAAGCUUAAGCCAUAGCUACGUCCACAUAAAUGCACGUAUAUGUGGGAA-A ((((((((.((((((..((..((((((.((((.....)))))))))).))......((((........))))..............)).)))).))).)))))-. ( -32.00) >DroYak_CAF1 27083 105 + 1 UUCCCCAUUUGCGGCUGGCCAGCCAAACGGCGUGCUCCGCUUAUGGUCGCAAUCAAAGCUUAAGCCAUAGCUACGUCCGUAUAAAUGCCCGUAUAUGUGGGAAAA ((((((((.(((((((((....))).((((((((....(((.(((((.((.......))....)))))))))))).))))......).))))).))).))))).. ( -35.90) >consensus UUCUCCAUUUGCGGCUGGCCAGCCAAACGUCGUGCUCUGCUUAUGGUCGCAAUCAAAGCUUAAGCCAUAGCUACGUCCAUAUAAAUGCACGUAUAUGUGGCAAAA ........(((((((((((.((((.......).)))..)))...))))))))...........((((((..(((((.(((....))).)))))..)))))).... (-26.18 = -26.82 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:37 2006