Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,352,732 – 1,352,852 |
Length | 120 |
Max. P | 0.992408 |
Location | 1,352,732 – 1,352,852 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.30 |
Mean single sequence MFE | -30.65 |
Consensus MFE | -21.49 |
Energy contribution | -20.93 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.23 |
Mean z-score | -2.63 |
Structure conservation index | 0.70 |
SVM decision value | 2.33 |
SVM RNA-class probability | 0.992408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1352732 120 + 20766785 UAAUAUGUACGUCGCAGUGUGUGUACGUGACUGCAUUUAAGUGCAUAGUUGUGUAGAACAGCUCUCACACUCACACGCACACUCGGAAUCGCACUCACACAUUCGUACUAGCACUCGCAC ......((((..((.(((((((((..((((.(((((....))))).((((((.....)))))).......)))))))))))))))((((.(........)))))))))..((....)).. ( -32.80) >DroSim_CAF1 49051 96 + 1 UAAUAUGUACGUCGCAGUGUGUGUACGUGACUGCAUUUAAGUGCAUAGUUGUGUAGAGCAGC----ACACUCACACUCACACA------------------CUCGCAC--ACACUCGCAC .............(((((((((((..(((..(((((....)))))..((.((((.(((....----...)))))))..)).))------------------)..))))--))))).)).. ( -30.70) >DroEre_CAF1 51509 102 + 1 UAAUAUGUACGUCGCAGUGUGUGUACGUGACUGCAUUUAAGUGCAUAGUUGUGUAGAACAGCUCGCACACUCACGCUCAC--UAGGA--------------AUCACAC--ACACACACAC ................((((((((..((((..........((((..((((((.....)))))).))))..((.(......--..)))--------------.))))..--)))))))).. ( -27.80) >DroYak_CAF1 38771 100 + 1 UAAUAUGUACGUCGCAGUGUGUGUACGUGACUGCAUUUAAGUGCAUAGUUGUGUAGAACAGCUCUCACACUCACAC--GC--UGAAA--------------CUCACAC--ACACACACAC .....(((..((..(((((((((...((((.(((((....))))).((((((.....)))))).))))...)))))--))--))..)--------------)..))).--.......... ( -31.30) >consensus UAAUAUGUACGUCGCAGUGUGUGUACGUGACUGCAUUUAAGUGCAUAGUUGUGUAGAACAGCUCUCACACUCACACUCAC__U_GGA______________CUCACAC__ACACACACAC ................((((((((..((((.(((((....)))))..(((((.....)))))........................................))))....)))))))).. (-21.49 = -20.93 + -0.56)
Location | 1,352,732 – 1,352,852 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.30 |
Mean single sequence MFE | -34.98 |
Consensus MFE | -18.50 |
Energy contribution | -18.62 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -2.37 |
Structure conservation index | 0.53 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.719126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1352732 120 - 20766785 GUGCGAGUGCUAGUACGAAUGUGUGAGUGCGAUUCCGAGUGUGCGUGUGAGUGUGAGAGCUGUUCUACACAACUAUGCACUUAAAUGCAGUCACGUACACACACUGCGACGUACAUAUUA (((((.(((....)))(...(((((.(((((....)..((((((((.(((((((...((.(((.....))).))..))))))).)))))..))))))).)))))..)..)))))...... ( -36.40) >DroSim_CAF1 49051 96 - 1 GUGCGAGUGU--GUGCGAG------------------UGUGUGAGUGUGAGUGU----GCUGCUCUACACAACUAUGCACUUAAAUGCAGUCACGUACACACACUGCGACGUACAUAUUA .....(((((--(((((((------------------((((((..(((((((((----(......))))).....((((......)))).)))))..))))))))....)))))))))). ( -36.50) >DroEre_CAF1 51509 102 - 1 GUGUGUGUGU--GUGUGAU--------------UCCUA--GUGAGCGUGAGUGUGCGAGCUGUUCUACACAACUAUGCACUUAAAUGCAGUCACGUACACACACUGCGACGUACAUAUUA ((((((((((--(((((((--------------(.(..--..).((((....(((((((.(((.....))).)).)))))....)))))))))))))))))))).))............. ( -33.10) >DroYak_CAF1 38771 100 - 1 GUGUGUGUGU--GUGUGAG--------------UUUCA--GC--GUGUGAGUGUGAGAGCUGUUCUACACAACUAUGCACUUAAAUGCAGUCACGUACACACACUGCGACGUACAUAUUA ((((((((((--((((((.--------------(....--((--((.(((((((...((.(((.....))).))..))))))).))))).)))))))))))))).))............. ( -33.90) >consensus GUGCGAGUGU__GUGCGAG______________UCC_A__GUGAGUGUGAGUGUGAGAGCUGUUCUACACAACUAUGCACUUAAAUGCAGUCACGUACACACACUGCGACGUACAUAUUA ((((((((((..(((((...........................((((((((((....)).)))).)))).....((((......))))....))))))))))).)).)).......... (-18.50 = -18.62 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:25 2006