Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,350,352 – 4,350,451 |
Length | 99 |
Max. P | 0.922831 |
Location | 4,350,352 – 4,350,451 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 87.85 |
Mean single sequence MFE | -28.23 |
Consensus MFE | -21.38 |
Energy contribution | -21.19 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -2.37 |
Structure conservation index | 0.76 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4350352 99 + 20766785 GGCUGUCGUGGUCAGGGAAAUCGAGGAAAUCGGGGAAAUCGGGGAAAUCGGGG-AAAUCUGGCCGAAAACAGAGGGUGAUGGAGGCCAGAGGGCUGGCUC ..((((..((((((((....((((.....((((.....)))).....))))..-...))))))))...))))...........((((((....)))))). ( -31.30) >DroSec_CAF1 20895 81 + 1 GGCUGUCGUGGUCAGGGAAAUCGAGGAAAUC------------------GGGG-AAAUCUGGCCGAAAACAGGGGGUGAUGGAGGCCAGAGGGCUGGCUC ..((((..((((((((....((((.....))------------------))..-...))))))))...))))...........((((((....)))))). ( -28.00) >DroSim_CAF1 21196 81 + 1 GGCUGUCGUGGUCAGGGAAAUCGAGGAAAUC------------------GGGG-AAAUCUGGCCGAAAACAGGGGGUGAUGGAGGCCAGAGGGCUGGCUC ..((((..((((((((....((((.....))------------------))..-...))))))))...))))...........((((((....)))))). ( -28.00) >DroYak_CAF1 19152 82 + 1 GGCUGUCGUGGUCAGGAAAAUCGAGGAAAUC------------------GGGGAAAAUCUGGCCGAAAACGGGGGGUGAUGGAGGCCAGAGGGCUGGCUC ..((((..((((((((....((((.....))------------------))......))))))))...))))...........((((((....)))))). ( -25.60) >consensus GGCUGUCGUGGUCAGGGAAAUCGAGGAAAUC__________________GGGG_AAAUCUGGCCGAAAACAGGGGGUGAUGGAGGCCAGAGGGCUGGCUC ..((((..((((((((....((............................)).....))))))))...))))...........((((((....)))))). (-21.38 = -21.19 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:31 2006