Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,330,991 – 4,331,150 |
Length | 159 |
Max. P | 0.965889 |
Location | 4,330,991 – 4,331,110 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.49 |
Mean single sequence MFE | -38.40 |
Consensus MFE | -24.86 |
Energy contribution | -24.53 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.12 |
Mean z-score | -2.05 |
Structure conservation index | 0.65 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.965889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4330991 119 + 20766785 AGUAGAUGGGCCG-UUUCAAGUGGGUGGUUAACAAGGACGGAAUGCUGCAUUCUUGGAGCAUUCCUUCCCAGUCCCCAGGCCCCAGCCUCCCAGCCACCCAGCAAUUCCAACUGCUGUUU (((((.((((..(-(......(((((((((.....(((.((((((((.((....)).)))))))).)))........((((....))))...)))))))))))...)))).))))).... ( -46.70) >DroEre_CAF1 9332 95 + 1 AGCAGAUGGGCCG-CUUGAAGUGGGUGGCUAACAAGGACGGAAUGCCGCAUUCUUGGCGCAUUCCUUCC-----------------------CGCC-CCUCGCAGUUCCAACUGCUGUUU (((((.(((((((-(((.....))))))).(((..(((.(((((((.((.......))))))))).)))-----------------------.((.-....)).)))))).))))).... ( -37.70) >DroYak_CAF1 10407 97 + 1 AGUAGACGGGCCCUUUUGAAGUGGGUGGCUAACAAGGACGGAAUGCUGCAUUCUUGGCGCAUUCCUCGC-----------------------AGCCCCCUCGCAAUUCCAACUGCUGUUU (((((..(((.....(((....(((.((((.....(((.(((((((.((.......))))))))))).)-----------------------)))))))...))).)))..))))).... ( -30.80) >consensus AGUAGAUGGGCCG_UUUGAAGUGGGUGGCUAACAAGGACGGAAUGCUGCAUUCUUGGCGCAUUCCUUCC_______________________AGCC_CCUCGCAAUUCCAACUGCUGUUU (((((...(((((.((......)).))))).....(((.(((((((..((....))..)))))))............................((......))...)))..))))).... (-24.86 = -24.53 + -0.33)
Location | 4,331,030 – 4,331,150 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.71 |
Mean single sequence MFE | -27.97 |
Consensus MFE | -20.13 |
Energy contribution | -20.13 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.72 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718029 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4331030 120 + 20766785 GAAUGCUGCAUUCUUGGAGCAUUCCUUCCCAGUCCCCAGGCCCCAGCCUCCCAGCCACCCAGCAAUUCCAACUGCUGUUUCUGUUUCUGCAUCGGCGGCCAUUCAACCUGGGCCUUCAUC (((((((.((....)).)))))))...(((((.....((((....))))....(((.(((((((........)))))....(((....)))..)).)))........)))))........ ( -36.50) >DroEre_CAF1 9371 96 + 1 GAAUGCCGCAUUCUUGGCGCAUUCCUUCC-----------------------CGCC-CCUCGCAGUUCCAACUGCUGUUUCUGUUUCUGCAUCGGCGGCCAUUCAACCUGGGCCUUCAUC ((((((.((.......)))))))).....-----------------------.(((-....(((((....)))))......(((....)))..)))((((..........))))...... ( -25.80) >DroYak_CAF1 10447 97 + 1 GAAUGCUGCAUUCUUGGCGCAUUCCUCGC-----------------------AGCCCCCUCGCAAUUCCAACUGCUGUUUCUGUUUCUGCAUCGGCGGCCAUUCAACCUGGGCCUUCAUC ((((((.((.......)))))))).....-----------------------.(((.....(((........)))......(((....)))..)))((((..........))))...... ( -21.60) >consensus GAAUGCUGCAUUCUUGGCGCAUUCCUUCC_______________________AGCC_CCUCGCAAUUCCAACUGCUGUUUCUGUUUCUGCAUCGGCGGCCAUUCAACCUGGGCCUUCAUC ((((((..((....))..)))))).............................(((.....(((........)))......(((....)))..)))((((..........))))...... (-20.13 = -20.13 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:29 2006