Locus 1063

Sequence ID 2R_DroMel_CAF1
Location 4,330,045 – 4,330,151
Length 106
Max. P 0.991641
window1876

overview

Window 6

Location 4,330,045 – 4,330,151
Length 106
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 70.98
Mean single sequence MFE -36.78
Consensus MFE -8.40
Energy contribution -9.76
Covariance contribution 1.36
Combinations/Pair 1.25
Mean z-score -2.49
Structure conservation index 0.23
SVM decision value 2.28
SVM RNA-class probability 0.991641
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4330045 106 + 20766785
UUUGUUGCGUAAUAAUAUUC---------GCAGCUUGCGGCUAUGCUAAACUAAGCUUAAUCAAAGGGGGGGGGGGGCACCGCCACUACGGUGUUGAUUUCAUUUGUG-CCGCAAC
...((((((..........)---------)))))(((((((...(((......))).....((((....(..(..(((((((......)))))))..)..).)))).)-)))))). ( -35.30)
>DroPse_CAF1 28874 110 + 1
UUUG-UGCAUAAUAAUUUUGUGUACAAAAGCCGCCGCUGGCGAUCCGUAAACA-----AAUCAAAGGCAUAAGGUUGGUCCCUUUUGGCGGUGUUGAUUUCAUUUGCGGCUCCCAC
((((-(((((((.....)))))))))))(((....)))((.((.(((((((.(-----((((((.(.((.((((......)))).)).)....)))))))..))))))).)))).. ( -36.30)
>DroPer_CAF1 28756 110 + 1
UUUG-UGCAUAAUAAUUUUGUGCACAAAAGCCGCCGAUGGCGAUCCGAAAACA-----AAUCAAAGGCAUACGGCUGGUCCCUUUUGGCGGUGUUGAUUUCAUUUGCGGCUCCCAC
((((-(((((((.....)))))))))))((((((.(((((.((((.((.....-----..))......((((.((..(......)..)).)))).))))))))).))))))..... ( -37.20)
>DroEre_CAF1 8420 104 + 1
UUUGUUGCGUAAUAAUAUUC---------GCAGCUUGCGGCGAUGCUAAACUCAGCUUAAUCAAAGGGGA--AGGAGCACCGCCCGCGCGGUGUUGAUUUCAUUUGUG-CCGCAAC
...((((((..........)---------)))))((((((((..(((......))).....((((..(((--(..((((((((....))))))))..)))).))))))-)))))). ( -39.70)
>DroYak_CAF1 9435 103 + 1
UUUG-AGCGUAAUAAUAUUC---------GCAGCUUGCGGCGAUGCUAAACUAAGCUUAAUCAAAGGGGA--AGGAGCACCGCCUGCGCGGUGUUGAUUUCAUUUGUG-CCGCAAC
....-.(((..........)---------))...((((((((..(((......))).....((((..(((--(..((((((((....))))))))..)))).))))))-)))))). ( -35.40)
>consensus
UUUG_UGCGUAAUAAUAUUC_________GCAGCUUGCGGCGAUGCUAAACUAAGCUUAAUCAAAGGGGA__GGGAGCACCGCCUGCGCGGUGUUGAUUUCAUUUGUG_CCGCAAC
...................................(((((((..................................(((((((....)))))))((....))....)).))))).. ( -8.40 =  -9.76 +   1.36) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:27 2006