| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,350,970 – 1,351,080 |
| Length | 110 |
| Max. P | 0.825455 |
| Location | 1,350,970 – 1,351,080 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.24 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -19.49 |
| Energy contribution | -21.18 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.95 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.825455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1350970 110 + 20766785 CAGAGCACUUUAAACAUGAAUUUUACUAUAAUUA----------GGACGACGAGAUGACUGUAAAUAAAAAUAGCGCAAUUUAAAGGCAUUCAAGUGCAAUACACCGGAAACGGAAAAGA ....((((((...............(((....))----------)......(((.((.((.(((((............))))).)).)))))))))))......(((....)))...... ( -18.40) >DroSec_CAF1 69155 120 + 1 CAGAGCACUUUAAACAUGAAUUUUACUAUAAUUAGAGUCCGAAAGGACGACCAGAUGACUGUAAAUAAAAAUAGCGCAAUUUAAAGGCAUUCAAGUGCAAUACACCGGAAACGGAAAAGA ....(((((.......((((((((((....(((.(.((((....))))...).)))....)))))........((.(........)))))))))))))......(((....)))...... ( -27.31) >DroSim_CAF1 47289 120 + 1 CAGAGCACUUUAAACAUGCAUUUUACUAUAAUUAGAGUCCGAAAGGACGACGAGAUGACUGUAAAUAAAAAUAGCGCAAUUUAAAGGCAUUCAAGUGCAAUACACCGGAAACGGAAAAGA ....((((((...(((..((((((.(((....))).((((....))))...))))))..)))...........((.(........)))....))))))......(((....)))...... ( -31.30) >DroEre_CAF1 49874 118 + 1 CAGAGCACU-UAUGCAUGAAUUUCACUAUAAUUAGGG-CCGAAAGGACGCCGAGAUAAAUGUAAAUAAAAAUAUCGCAAUUUAAAGGCAUUCAAGUGCAAUACACCGGAAACGGAAAAGA ....(((((-(.(((((..(((((.(((....)))((-((....)...))))))))..)))))............((.........))....))))))......(((....)))...... ( -29.90) >consensus CAGAGCACUUUAAACAUGAAUUUUACUAUAAUUAGAG_CCGAAAGGACGACGAGAUGACUGUAAAUAAAAAUAGCGCAAUUUAAAGGCAUUCAAGUGCAAUACACCGGAAACGGAAAAGA ....((((((...(((...(((((.(((....))).((((....))))...)))))...))).............((.........))....))))))......(((....)))...... (-19.49 = -21.18 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:22 2006