Locus 1058

Sequence ID 2R_DroMel_CAF1
Location 4,323,538 – 4,323,636
Length 98
Max. P 0.915605
window1867

overview

Window 7

Location 4,323,538 – 4,323,636
Length 98
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.15
Mean single sequence MFE -24.89
Consensus MFE -4.00
Energy contribution -5.04
Covariance contribution 1.04
Combinations/Pair 1.10
Mean z-score -2.06
Structure conservation index 0.16
SVM decision value 1.10
SVM RNA-class probability 0.915605
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4323538 98 - 20766785
CGAAAUGCAGU---UUUAAAUCUGGGCAAACCACUCCCACUGC--------CGCCUGCCCCGC--UGGCACAUUCUAACAG---------AAGGGAAAAUGGAAAUAAAAUAAAACUUAG
........(((---((((....(((.....))).((((.....--------.(((.((...))--.)))...(((.....)---------))))))..............)))))))... ( -19.20)
>DroPse_CAF1 21673 112 - 1
CAAAAUGCAGUACUAUUAAAUCUGGCCAACACUCUAGUACUUCCCCCCCUUCGCCUACUACGCCUUCCCACCAUCUGGCAGGCCCCUCGGAGGGGG----GGAAA----AAAAAACUAAA
.........((((((...................))))))(((((((((((((........((((.((........)).))))....)))))))))----)))).----........... ( -35.91)
>DroSec_CAF1 2954 98 - 1
CGAAAUGCAGU---UUUAAAUCUGGGCAAACCACUCCCACUGC--------CGCCAGCCCCGC--UGGCACAUUCUAGCAG---------AAGGGAAAAUGGAAAUAAAAUAAAACUUAG
........(((---((((....(((.....))).((((.((((--------.((((((...))--))))........))))---------..))))..............)))))))... ( -24.40)
>DroEre_CAF1 2304 97 - 1
CGAAAUGCAGU---UUUAAAUCUGGCCAAACCACUCCCACUGC--------CGCCUUCCCCGC--UGGCACAU-CUAGCAG---------AAGGGAAACUGGAAAUAAAAUAAAACUUAG
.....(.((((---(((......(((...............))--------).(((((...((--(((.....-))))).)---------))))))))))).)................. ( -20.36)
>DroYak_CAF1 3225 98 - 1
CGAAAUGCAGU---UUUAAAUCUGGGCAAACCACUCCCAGUGC--------CGCCUUCCCCGC--UGGCACAUUCUGGCAG---------AAGUGAAACUGGAAAUAAAAUAAAACUUAG
.....(.((((---((((..((((((....))....(((((((--------(((.......))--.)))))....))))))---------)..)))))))).)................. ( -24.60)
>consensus
CGAAAUGCAGU___UUUAAAUCUGGGCAAACCACUCCCACUGC________CGCCUGCCCCGC__UGGCACAUUCUAGCAG_________AAGGGAAAAUGGAAAUAAAAUAAAACUUAG
.....(((..............((((.........)))).............(((...........)))........)))........................................ ( -4.00 =  -5.04 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:19 2006