Locus 1057

Sequence ID 2R_DroMel_CAF1
Location 4,322,143 – 4,322,240
Length 97
Max. P 0.807861
window1866

overview

Window 6

Location 4,322,143 – 4,322,240
Length 97
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 95.11
Mean single sequence MFE -32.02
Consensus MFE -26.74
Energy contribution -26.82
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.59
Structure conservation index 0.84
SVM decision value 0.64
SVM RNA-class probability 0.807861
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4322143 97 - 20766785
CCCCAAA-AAAGGGUUGGCCC-GGUCUUAUUUUACGAGCGGGAGACUAUCAGUGUUAUUGUUAUGACUGAAAUUUGAUGGCCCCGACCGCUUUUCGGGC
.(((..(-(((((((((((((-(.((.........)).))))...(((((((.(((((....)))))......)))))))..)))))).))))).))). ( -31.80)
>DroSec_CAF1 1554 99 - 1
CCCCAAAAAAAGGGUUGGCCGGGGUCUUAUUUUACGAGCUGGGGACUAUCAGUGUUAUUGUUAUGACUGAAAUUUGAUGGCCCCGACCGCUUUUCGGGC
.(((...((((((((((((((..(.......)..)).)))((((.(((((((.(((((....)))))......))))))))))))))).))))).))). ( -32.10)
>DroSim_CAF1 2704 98 - 1
CCCCAAAAAAAGGGUUGGCCG-GGUCUUAUUUUACGAGCGGGGGACUAUCAGUGUUAUUGUUAUGACUGAAAUUUGAUGGCCCCGACCGCUUUUCGGGC
.(((...(((((((((.((((-............)).)).((((.(((((((.(((((....)))))......))))))))))))))).))))).))). ( -30.90)
>DroEre_CAF1 940 96 - 1
CCCCGA--AAAGGGUUGACUG-GGUCUUAUUUUACGAGCGGGGGACUAUCAGUGUUAUUGUUAUGACUGAAAUUUGAUGGCCCCGACCGCUUUUCGGGC
.(((((--(((((((((.((.-(...........).))).((((.(((((((.(((((....)))))......))))))))))))))).))))))))). ( -36.60)
>DroYak_CAF1 1783 97 - 1
CCUCAAA-AAAGGGUUGGCUG-GAUCUUAUUUUACGAGCGGGGGACUAUCAGUGUUAUUGUUAUGACUGAAAUUUGAUGGCCCCGACCGCUUUUCGGGC
(((...(-((((((((.(((.-(...........).))).((((.(((((((.(((((....)))))......))))))))))))))).))))).))). ( -28.70)
>consensus
CCCCAAA_AAAGGGUUGGCCG_GGUCUUAUUUUACGAGCGGGGGACUAUCAGUGUUAUUGUUAUGACUGAAAUUUGAUGGCCCCGACCGCUUUUCGGGC
.(((....(((((((((((....)))..............((((.(((((((.(((((....)))))......))))))))))))))).))))..))). (-26.74 = -26.82 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:18 2006