Locus 1056

Sequence ID 2R_DroMel_CAF1
Location 4,320,679 – 4,320,769
Length 90
Max. P 0.735049
window1865

overview

Window 5

Location 4,320,679 – 4,320,769
Length 90
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.46
Mean single sequence MFE -32.44
Consensus MFE -11.03
Energy contribution -11.98
Covariance contribution 0.94
Combinations/Pair 1.06
Mean z-score -2.18
Structure conservation index 0.34
SVM decision value 0.43
SVM RNA-class probability 0.735049
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4320679 90 - 20766785
-----------------CUGCAGCAGUGGC----AACAAAUUGCAAUUACUGC-CACACUUUGCGGCACCGCAGGCAGCCG--------CUCGCUGGCCUCAACUCCGGGUACAUCUAUA
-----------------...((((((((((----((....)))).....((((-(......((((....))))))))).))--------)).))))((((.......))))......... ( -27.80)
>DroPse_CAF1 18604 120 - 1
UGCUACUGCUACUGCGGCGGCGGCAGUGGCAAGCAACAAAUUGCAAUUACUGGCAACACUUUGCCGCACCGCAGGCAGCAGGCUUCGGUCUCUCUCUCCCCCUUUCCCGCUUUAUCACCG
.((..(((((.((((((..(((((((.(((((........))))......((....))).))))))).))))))..)))))((....))...................)).......... ( -41.40)
>DroSec_CAF1 94 90 - 1
-----------------CUGCAGCAGUGGC----AACAAAUUGCAAUUACUGC-CACACUUUGCGGCACCGCAGGCAGCCG--------CUCGCUGGCCUCAACUCCGGCUACAUCUACA
-----------------...((((((((((----((....)))).....((((-(......((((....))))))))).))--------)).))))(((........))).......... ( -28.80)
>DroSim_CAF1 359 90 - 1
-----------------CUGCAGCAGUGGC----AACAAAUUGCAAUUACUGC-CACACUUUGCGGCACCGCAGGCAGCCG--------CUCGCUGGCCUCAACUCCGGCUACAUCUACA
-----------------...((((((((((----((....)))).....((((-(......((((....))))))))).))--------)).))))(((........))).......... ( -28.80)
>DroPer_CAF1 18576 120 - 1
UGUUACUGCUACUGCUGCGGCGGCACUGGCAAGCAACAAAUUGCAAUUACUGGCAACACUUUGCCGCACAGCAGGCAGCGGGCUUCGGUCUCUCUCUCCCCCUUUCCCUCUUUAUCACCG
.....(((((.((((((..((((((..(((((........))))......((....)))..)))))).))))))..)))))((....))............................... ( -37.30)
>DroYak_CAF1 341 90 - 1
-----------------CUGCAGCAGUGGC----AACAAAUUGCAAUUACUGC-CACACUUUGCGGCACCGCAGGCUGCCG--------CUCGCUGGCCUCAACUUCGGCUACAUCUACA
-----------------...((((.(((((----(...............)))-))).....((((((((...)).)))))--------)..))))(((........))).......... ( -30.56)
>consensus
_________________CUGCAGCAGUGGC____AACAAAUUGCAAUUACUGC_CACACUUUGCGGCACCGCAGGCAGCCG________CUCGCUGGCCUCAACUCCGGCUACAUCUACA
...................((.(((((............)))))................(((((....)))))))(((((.........................)))))......... (-11.03 = -11.98 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:17 2006