Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,319,970 – 4,320,079 |
Length | 109 |
Max. P | 0.917766 |
Location | 4,319,970 – 4,320,079 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 77.35 |
Mean single sequence MFE | -21.69 |
Consensus MFE | -9.43 |
Energy contribution | -11.89 |
Covariance contribution | 2.46 |
Combinations/Pair | 1.15 |
Mean z-score | -2.08 |
Structure conservation index | 0.43 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824818 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4319970 109 + 20766785 UUUGGUGUUAGUAAUAAAACCCAUGCU-CACACAUAAAAAGCACUUAAGCUUUGUUUUUUGUUGUUUUUUUUUUUUUUUGUCAGCUUAAGCAAAGUGCAAGUGUGUGUAU ....((((.((((..........))))-.)))).......((((((..(((((((((...((((.................))))..)))))))))..))))))...... ( -25.03) >DroSec_CAF1 75014 91 + 1 UUUGGUGUUAGUAAUAAAACCCCUGCU-CACACAUAAAAUGCACUUAAGCUUUGUUGUU------------------UUUGCAGCUUAAGCAAAGUGAAAGUGUGUGUAU ...(((.(((....))).)))......-.(((((((.....(((((..((((.(((((.------------------...)))))..)))).)))))....))))))).. ( -25.30) >DroSim_CAF1 78614 92 + 1 UUUGGUGUUAGUAAUAAAACCCCUGCU-CACACAUAAAAAGCACUUAGGCUUUGUUGUUU-----------------UUUGCAGCUUAAGCAAAGUGAAAGUGUGUGUAU ...(((.(((....))).)))......-.(((((((.....(((((..((((.(((((..-----------------...)))))..)))).)))))....))))))).. ( -26.10) >DroEre_CAF1 74155 90 + 1 UUUGGUGUUAGUAAUAAAACCCAUGUUUUGCUCAUAAAAAGCACUUAAGCCUUGUU---U-----------------UUUGCAGCUUAAGCUAAGUGAAAGCGUACAUAU ...(((.(((....))).))).((((((((((.......))).(((((((..(((.---.-----------------...)))))))))).......)))))))...... ( -17.60) >DroYak_CAF1 76488 87 + 1 --UGGUGUUAGUAAUAAAUUCCACGCU-UACACAUAAAAAGCACUUAACUCUUUUU---U-----------------UGUUCAGCUUACGCAAAAUGAAAGUGCAUAUAA --..((((.(((............)))-.)))).......((((((...((...((---(-----------------(((.........)))))).))))))))...... ( -14.40) >consensus UUUGGUGUUAGUAAUAAAACCCAUGCU_CACACAUAAAAAGCACUUAAGCUUUGUU_UUU_________________UUUGCAGCUUAAGCAAAGUGAAAGUGUGUGUAU ...(((.(((....))).)))...................((((((..((((((((................................))))))))..))))))...... ( -9.43 = -11.89 + 2.46)
Location | 4,319,970 – 4,320,079 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 77.35 |
Mean single sequence MFE | -18.50 |
Consensus MFE | -11.79 |
Energy contribution | -11.63 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.30 |
Mean z-score | -1.98 |
Structure conservation index | 0.64 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.917766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4319970 109 - 20766785 AUACACACACUUGCACUUUGCUUAAGCUGACAAAAAAAAAAAAAAACAACAAAAAACAAAGCUUAAGUGCUUUUUAUGUGUG-AGCAUGGGUUUUAUUACUAACACCAAA ...((((((...(((((.....((((((...............................)))))))))))......))))))-....((((((........))).))).. ( -20.48) >DroSec_CAF1 75014 91 - 1 AUACACACACUUUCACUUUGCUUAAGCUGCAAA------------------AACAACAAAGCUUAAGUGCAUUUUAUGUGUG-AGCAGGGGUUUUAUUACUAACACCAAA .....(((((.........(((((((((.....------------------........))))))))).........)))))-....((.(((........))).))... ( -20.09) >DroSim_CAF1 78614 92 - 1 AUACACACACUUUCACUUUGCUUAAGCUGCAAA-----------------AAACAACAAAGCCUAAGUGCUUUUUAUGUGUG-AGCAGGGGUUUUAUUACUAACACCAAA ...((((((.......(((((.......)))))-----------------.......(((((......)))))...))))))-....((.(((........))).))... ( -17.50) >DroEre_CAF1 74155 90 - 1 AUAUGUACGCUUUCACUUAGCUUAAGCUGCAAA-----------------A---AACAAGGCUUAAGUGCUUUUUAUGAGCAAAACAUGGGUUUUAUUACUAACACCAAA .(((((..((((.......(((((((((.....-----------------.---.....))))))))).........))))...)))))(((.(((....))).)))... ( -19.09) >DroYak_CAF1 76488 87 - 1 UUAUAUGCACUUUCAUUUUGCGUAAGCUGAACA-----------------A---AAAAAGAGUUAAGUGCUUUUUAUGUGUA-AGCGUGGAAUUUAUUACUAACACCA-- ...((((((.........)))))).(((..(((-----------------.---..(((((((.....)))))))...))).-)))(((..............)))..-- ( -15.34) >consensus AUACACACACUUUCACUUUGCUUAAGCUGCAAA_________________AAA_AACAAAGCUUAAGUGCUUUUUAUGUGUG_AGCAUGGGUUUUAUUACUAACACCAAA ...((((((..........(((((((((...............................)))))))))........))))))......(((((........))).))... (-11.79 = -11.63 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:16 2006