Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,319,349 – 4,319,567 |
Length | 218 |
Max. P | 0.914570 |
Location | 4,319,349 – 4,319,466 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 86.39 |
Mean single sequence MFE | -40.83 |
Consensus MFE | -28.82 |
Energy contribution | -29.49 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.10 |
Mean z-score | -3.15 |
Structure conservation index | 0.71 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4319349 117 - 20766785 UUGGGUGGUUAUAUAUGGGUGGUUGAGUACGGGCUGGGUUGGCGGGAAUUUUUCCGCCAUGAGCAGUGCGAACUUGUUCUCGCAUUUUUGGCCAGUACUCUGUACUCUGCUGCAAUU ....(..((.......(((((...((((((.(((..((.((((((((....)))))))).....(((((((........)))))))))..))).))))))..))))).))..).... ( -44.10) >DroSec_CAF1 74414 104 - 1 UUGGGUGGUUGUAUAUGGGUGGUUGAGUACGGGCUGGGUUGGCGGGGAAUUC-------------GUGCGAACUUGUGCUCGGAUUUUUGGCCACUACUCUGUACUCUGCUGCAAUU ..................(..((.((((((((..(((..((((.((((((((-------------(.(((......))).))))))))).)))))))..)))))))).))..).... ( -40.20) >DroSim_CAF1 78008 104 - 1 UUGGGUGGUUGUGUAUGGGUGGUUGAGUACGGGCUGCGUUGGCGGGGAAUUC-------------GUGCGAACUUGUGCUUGGAUUUUUGGCCAGUACUCUGUACUCUGCUGCAAUU ..................(..((.((((((((..(((..((((.((((((((-------------(.(((......))).))))))))).)))))))..)))))))).))..).... ( -38.20) >consensus UUGGGUGGUUGUAUAUGGGUGGUUGAGUACGGGCUGGGUUGGCGGGGAAUUC_____________GUGCGAACUUGUGCUCGGAUUUUUGGCCAGUACUCUGUACUCUGCUGCAAUU ..................(..((.((((((((..(((..((((.((((((((.............(((((....)))))..)))))))).)))))))..)))))))).))..).... (-28.82 = -29.49 + 0.67)
Location | 4,319,466 – 4,319,567 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 84.82 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -22.05 |
Energy contribution | -21.41 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.21 |
Mean z-score | -2.32 |
Structure conservation index | 0.65 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809932 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4319466 101 - 20766785 AUUCUGCGCCACUCCUGAAAUUCGA-----CCCACAACCAGAAAGUAUAUUCAACGUUGGUGCUUUCCCAGCGAAUUGGUUGAUUACUUUUUCGGUGGU-------GCGAUGG ....(((((((((...((((.....-----....(((((((((......)))..((((((.......))))))...)))))).......))))))))))-------))).... ( -29.49) >DroSec_CAF1 74518 106 - 1 AUUCUGCGCCACUCCUGAAAUUCGACCCGACCCACGACCAGAAAGUAUAUUCAACGUUGGGGCUUUCCCAGCGAAUUGGUUGAUUACUUUUUCGGUGGU-------GCGAUGG ....(((((((((...((((.(((...)))....(((((((((......)))..(((((((.....)))))))...)))))).......))))))))))-------))).... ( -33.60) >DroSim_CAF1 78112 101 - 1 AUUCUGCGCCACUCCUGAAAUUCGA-----CCCACGACCAGAAAGUAUAUUCAACGUUGGGGCUUUCCCAACGAAUUGGUUGAUUACUUUUUCGGUGGU-------GCGAUGG ....(((((((((...((((.((((-----((........(((......)))..(((((((.....)))))))....))))))....))))..))))))-------))).... ( -33.20) >DroEre_CAF1 73719 98 - 1 AUUCUGCGCCACUCCUGAAAUUCGA-----CCGACAACUGGAAAGU--AUUCAACGUUGGGGCUUCACCAGCGAAUCGGUUGAUUACUUUUUCGGUGGUUGGUGG-------- ......((((((..((((((.((((-----((((..(((....)))--......((((((.......))))))..))))))))......))))))..).))))).-------- ( -36.00) >DroYak_CAF1 75999 106 - 1 AUUCUACGUCACUCCUAAAAUUCGA-----CCUACAACCAGAAAGU--AUUCAACGUUGGGGCUUUCCCAGCGAAUUGGUUGAUUACUUUUUCGGUGGUGGGUGGUGCAGUGA ........(((((.(.......(.(-----(((((.((((((((((--(.(((((((((((.....))))))......))))).)))))))).))).)))))).).).))))) ( -36.70) >consensus AUUCUGCGCCACUCCUGAAAUUCGA_____CCCACAACCAGAAAGUAUAUUCAACGUUGGGGCUUUCCCAGCGAAUUGGUUGAUUACUUUUUCGGUGGU_______GCGAUGG .......(((((..........(((.........(((((((((......)))..(((((((.....)))))))...)))))).........)))))))).............. (-22.05 = -21.41 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:14 2006