Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,315,469 – 4,315,574 |
Length | 105 |
Max. P | 0.513939 |
Location | 4,315,469 – 4,315,574 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 82.57 |
Mean single sequence MFE | -27.45 |
Consensus MFE | -19.29 |
Energy contribution | -21.73 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.50 |
Structure conservation index | 0.70 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4315469 105 - 20766785 AAAACUGUUU----CUUUAGAGUAAAACAAAGGGCUUGGGGCCUUUGGCAAUGGAAUUUUUAUCCAAAAGCCAGGAGUUUUGUGGCCACUGCAACUGGUGACACUUGCA ...(((.(..----....).))).......(((((((..(((..(((((..((((.......))))...)))))..)))..).)))).))((((.((....)).)))). ( -29.20) >DroSec_CAF1 70538 109 - 1 AAAAAAGUUUUUUUUUUUAGAGUAAAACAAAGGACUUGGAGCCUUUGGCAAUGGAAUUUUUAUCCACUAGUCAGGGGUUUUGUGGCCACUGCAACUGGUGACACUUGCA ....(((((((((.(((((...))))).)))))))))((((((((((((..((((.......))))...)))))))))))).........((((.((....)).)))). ( -31.40) >DroSim_CAF1 74122 109 - 1 AAAAAUGUUUUUUUUUUUAGAGUAAAACAAAGGACUUGGAGCCUUUGGCAAUGGAAUUUGUAUCAAAAAGUCAGGGGUUUUGUGGCCACUGCAACUGGUGACACUUGCA .....((((((.(((....))).))))))..((...(..((((((((((....((.......)).....))))))))))..)...))...((((.((....)).)))). ( -27.70) >DroEre_CAF1 69859 104 - 1 AAAAAAUGUAUUUUUU----AAUAAAACAAAGGGCUUGGAGCCUUCAGCAAUGGAAUUGUUUUCCAAGAUACAGGGGAU-UGCAUCCACUGGAACUGGUGACAACUGCA ................----..........(((((.....)))))..(((.(((((.....))))).....(((.((((-...)))).)))....((....))..))). ( -21.50) >consensus AAAAAAGUUUUUUUUUUUAGAGUAAAACAAAGGACUUGGAGCCUUUGGCAAUGGAAUUUUUAUCCAAAAGUCAGGGGUUUUGUGGCCACUGCAACUGGUGACACUUGCA ...............................((.(.(((((((((((((..((((.......))))...))))))))))))).).))...((((.((....)).)))). (-19.29 = -21.73 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:12 2006