Locus 1052

Sequence ID 2R_DroMel_CAF1
Location 4,314,889 – 4,314,996
Length 107
Max. P 0.723532
window1859

overview

Window 9

Location 4,314,889 – 4,314,996
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.64
Mean single sequence MFE -26.40
Consensus MFE -21.83
Energy contribution -22.13
Covariance contribution 0.31
Combinations/Pair 1.12
Mean z-score -1.99
Structure conservation index 0.83
SVM decision value 0.41
SVM RNA-class probability 0.723532
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4314889 107 - 20766785
CGGCGCACAA-ACACAAAGGAUAUCGACUCCCUUUGAGCAGAA-UGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGAAAAGUGAAAGUGCGUGGAAGGAAGCC---CAU--------
(.((((((..-...((((((..........)))))).(((...-...))).....(((((.(((((........)))))....))))).)))))).)..((....)---)..-------- ( -28.80)
>DroGri_CAF1 95406 117 - 1
-GAGGCAGCU-CCACAAAGGAAAUCGACUCCCUUUGAGCAGAA-UGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGAAAAGUGAAAGUGUGUGGAAGCAAAUGGCGAAUGCAGGGUG
-...(((..(-(((((((((..........)))))..(((...-...))).....(((((.(((((........)))))....))))).....))))).((.....))...)))...... ( -24.30)
>DroSec_CAF1 69976 107 - 1
CGGCGCACAA-ACACAAAGGAAAUCGACUCCUUUUGAGCAGAA-UGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGAAAAGUGAAAGUGCGUGGAAGGAAGCU---CAU--------
(.((((((..-.((.((((((.......)))))))).(((...-...))).....(((((.(((((........)))))....))))).)))))).).........---...-------- ( -26.80)
>DroWil_CAF1 118948 106 - 1
---CACACAACACACAAAGGAAAUCGACUCCCUUUGAGCAGAAUUGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGAAAAGUGAAAGUGCGUGGAAGGAAGUU---CCC--------
---..(((..(((.((((((..........)))))).(((.......))).....(((((.(((((........)))))....))))).))).)))...((.....---)).-------- ( -21.40)
>DroYak_CAF1 71353 107 - 1
CGGCGCACAA-GCACAAAGGAUAUCGACUCCCUUUGAGCAGAA-UGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGAAAAGUGAAAGUGCGUGGAAGGAAGCU---CAU--------
(.((((((..-((.((((((..........)))))).))....-...........(((((.(((((........)))))....))))).)))))).).........---...-------- ( -28.30)
>DroAna_CAF1 77859 100 - 1
CGGCGCACAA-ACACAAAGGAUAUCGACUCCCUUUGAGCAGAA-UGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGGAAAGUGAAAGUGCGUGGAAGAC------------------
(.((((((..-...((((((..........)))))).(((...-...))).....(((((.(((((........)))))....))))).)))))).).....------------------ ( -28.80)
>consensus
CGGCGCACAA_ACACAAAGGAAAUCGACUCCCUUUGAGCAGAA_UGAUGCAAUUAUUCACACUUGAUUAAAUACUCAAGAAAAGUGAAAGUGCGUGGAAGGAAGCU___CAU________
..((((((......((((((..........)))))).(((.......))).....(((((.(((((........)))))....))))).))))))......................... (-21.83 = -22.13 +   0.31) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:11 2006