Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,312,400 – 4,312,494 |
Length | 94 |
Max. P | 0.525585 |
Location | 4,312,400 – 4,312,494 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 98.52 |
Mean single sequence MFE | -25.22 |
Consensus MFE | -23.82 |
Energy contribution | -23.98 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -0.82 |
Structure conservation index | 0.94 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4312400 94 + 20766785 GUGGA-AAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUGUAGUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC ((((.-((((((...)))))).......(((((..((.((.((.((.......)).)).))))..)))))..))))....((((.....)))).. ( -24.80) >DroSec_CAF1 67569 94 + 1 GUGGA-AAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUGUAGUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC ((((.-((((((...)))))).......(((((..((.((.((.((.......)).)).))))..)))))..))))....((((.....)))).. ( -24.80) >DroSim_CAF1 71034 94 + 1 GUGGA-AAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUGUAGUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC ((((.-((((((...)))))).......(((((..((.((.((.((.......)).)).))))..)))))..))))....((((.....)))).. ( -24.80) >DroEre_CAF1 66996 95 + 1 GUGGACAAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUGUAGUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC ((((((((((((...)))))))))((..(((((..((.((.((.((.......)).)).))))..))))).)))))....((((.....)))).. ( -29.70) >DroYak_CAF1 68826 95 + 1 GUGGAAAAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUGUAGUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC ((((..((((((...)))))).......(((((..((.((.((.((.......)).)).))))..)))))..))))....((((.....)))).. ( -24.80) >DroAna_CAF1 75423 95 + 1 GUGGAAAAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUAUACUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC ((((..((((((...))))))...(((..(((..((..((((..........)))).)).)))..)))....))))....((((.....)))).. ( -22.40) >consensus GUGGA_AAGUCGUCGCGACUUGUCGUUUUUGUCUCUGACAGUUGGCAAAUGUAGUGAAGUGCAUUGACAAUACCACGAACCAAGUACAGCUUGAC ((((..((((((...)))))).......(((((..((.((.((.((.......)).)).))))..)))))..))))....((((.....)))).. (-23.82 = -23.98 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:09 2006