Locus 1049

Sequence ID 2R_DroMel_CAF1
Location 4,311,966 – 4,312,060
Length 94
Max. P 0.667381
window1856

overview

Window 6

Location 4,311,966 – 4,312,060
Length 94
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 86.09
Mean single sequence MFE -14.18
Consensus MFE -12.38
Energy contribution -12.88
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.87
SVM decision value 0.28
SVM RNA-class probability 0.667381
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4311966 94 - 20766785
UGUCU--GUUUGUUGACAUAUUAUGAUCCUUGAUUAUUUUGUGCUGACAAAUACAUGCUUUUCCUUUUUCCACACU-GCCGUACUCUCUCUAUACAC
....(--(((((((..((((..((((((...))))))..))))..)))))))).......................-.................... ( -14.50)
>DroSec_CAF1 67131 90 - 1
UGUCU--GUUUGUUGACAUAUUAUGAUCCUUGAUUAUUUUGUGCUGACAAAUACAUGCUUUUCCUUUUUCCACACU-GCCAUACU----CUAUACAC
....(--(((((((..((((..((((((...))))))..))))..)))))))).......................-........----........ ( -14.50)
>DroSim_CAF1 70601 90 - 1
UGUCU--GUUUGUUGACAUAUUAUGAUCCUUGAUUAUUUUGUGCUGACAAAUACAUGCUUUUCCUUUUUCCACACU-GCCAUACU----CUAUACAC
....(--(((((((..((((..((((((...))))))..))))..)))))))).......................-........----........ ( -14.50)
>DroEre_CAF1 66549 88 - 1
UGUCU--GUUUGUUGACAUAUUAUGAUCCUUGAUUAUUUUGUGCUGACAAAUACAUGCUUUUCCUUUUGCCACACU-GCCGUA------CUAUACAC
....(--(((((((..((((..((((((...))))))..))))..)))))))).......................-......------........ ( -14.50)
>DroWil_CAF1 114479 78 - 1
UGUCUUGUUUUGUUGACAUCUUAUGAUCCUUGAUUAUUUUCUGCUGACAAAUACAUGCUUCUGUUUUGUU-AGGCUCGC------------------
((((..........))))....((((((...))))))......((((((((.(((......)))))))))-))......------------------ ( -11.60)
>DroYak_CAF1 68376 93 - 1
UGUCU--GUUUGUUGACAUAUUAUGAUCCUUGAUUAUUUUGUGCUGACAAAUACAUGCUUUUCCUUUUUCCACACU-GCUGUACACU-GCUAUACAC
....(--(((((((..((((..((((((...))))))..))))..)))))))).......................-((........-))....... ( -15.50)
>consensus
UGUCU__GUUUGUUGACAUAUUAUGAUCCUUGAUUAUUUUGUGCUGACAAAUACAUGCUUUUCCUUUUUCCACACU_GCCGUACU____CUAUACAC
.((....(((((((..((((..((((((...))))))..))))..)))))))....))....................................... (-12.38 = -12.88 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:08 2006