| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,310,594 – 4,310,700 |
| Length | 106 |
| Max. P | 0.918137 |
| Location | 4,310,594 – 4,310,700 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 78.86 |
| Mean single sequence MFE | -36.52 |
| Consensus MFE | -25.05 |
| Energy contribution | -25.61 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4310594 106 + 20766785 CCCUGCCCUUCGGCGGUCAUGUGAACAGCCGCCACCAUGC-GGCGCUAACCCGAUCCCAUUUCCAUUCUCAAUCCGGGUUCAAAUCGCGAUUUCGCGGGUGUGCC-AA ....((.....((((((..((....)))))))).....))-(((((..((((((.(((.................))).)).....(((....))))))))))))-.. ( -37.83) >DroSec_CAF1 65814 106 + 1 CCCUGCCCACCGGCGGUCAUGUGAAAAGCCGCCACAAUGC-GGCGCUAACCCGAUCCCAUUUUCAUUCUCAAUCCGGGUUCAAAUCGCGAAUUCGCGGGUGUGCC-AA ....((.((((.((((...(((((...(((((......))-)))...((((((.....................))))))....)))))...)))).)))).)).-.. ( -36.90) >DroSim_CAF1 69273 106 + 1 CCCUGCCCACCGGCGGUCAUGUGAACAGCCGCCACAAUGC-GGCGCUAACCCGAUCCCAUUUUCAUUCUCAAUCCGGGUUCAAAUCGCGAGUUCGCGGGUGUGCC-AA ....((.....((((((..((....)))))))).....))-(((((..((((((.(((.................))).)).....(((....))))))))))))-.. ( -37.83) >DroEre_CAF1 65225 104 + 1 CCCUGCU--CCGGCGGUCAUGUGAACAGCCGCCACCAUGC-GGCGCUAAUCCGAUCCCAUUUCCAUUCUCAAUCCGGGCUCAAAUCGCGACUUCGCGGGUGUGCC-AA ....((.--..((((((..((....)))))))).....))-(((((..((((((.(((.................))).)).....(((....))))))))))))-.. ( -35.03) >DroYak_CAF1 67053 104 + 1 CCCUGCU--CCGGCGGUCAUGUGAACAGCCGCCACUAUGC-GGCGCUAACCCGGUCCCAUUUCCAUUCUCAAUCCGGGUUCAAAUCGCGACUUCGCGGGUGUGCC-AA ....((.--..((((((..((....)))))))).....))-(((((.(((((((...................)))))))....(((((....)))))..)))))-.. ( -39.01) >DroAna_CAF1 73258 94 + 1 ---GGCU--CUGGAGGUUUUGUGGAGCUGGUCCACUAAAUAGACCCCAAUCCGGUUGCCCUUAGGUU---------GCCCCAAAUCCCGUCUUUGGUGGCGUCCCCAG ---(((.--((((((((((.(((((.....))))).....)))))....)))))..)))....((.(---------((((((((.......))))).)))).)).... ( -32.50) >consensus CCCUGCC__CCGGCGGUCAUGUGAACAGCCGCCACAAUGC_GGCGCUAACCCGAUCCCAUUUCCAUUCUCAAUCCGGGUUCAAAUCGCGACUUCGCGGGUGUGCC_AA ...........((((((..........))))))........(((((..((((((.(((.................))).)).....(((....))))))))))))... (-25.05 = -25.61 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:07 2006