Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,307,295 – 4,307,396 |
Length | 101 |
Max. P | 0.697660 |
Location | 4,307,295 – 4,307,396 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 94.04 |
Mean single sequence MFE | -30.92 |
Consensus MFE | -22.90 |
Energy contribution | -24.30 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.11 |
Mean z-score | -2.29 |
Structure conservation index | 0.74 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697660 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4307295 101 + 20766785 GCUCUCAAAGAAAACCGAAGGAUGGGGCCAUCGAGGGG-AGGCAAAUGAAUCUGAAGAUUACGAAUGUCUGCUGUUCGGGCCCCGUCUUCGAAAAUAAGAAU ...............(((((.((((((((..((((.((-(((((..((((((....)))).))..))))).)).)))))))))))))))))........... ( -36.80) >DroSec_CAF1 62486 100 + 1 GCUCUCAAAGAAAACCGGAGGA-GGGCCCAUCGAGGGG-AGGCAAAUGAAUCUGAAGAUUACGAAUGUCUGCUGUUCGGGCCCCAUCUUCGAAAAUAAGAAU ...............((((((.-((((((...((.((.-(((((..((((((....)))).))..))))).)).)).))))))..))))))........... ( -31.20) >DroSim_CAF1 65875 100 + 1 GCUCUCAAAGAAAACCGGAGGA-GGGCCCAUCGAGGGG-AGGCAAAUGAAUCUGAAGAUUACGAAUGUCUGCUGUUCGGGCCCCAUCUUCGAAAAUAAGAAU ...............((((((.-((((((...((.((.-(((((..((((((....)))).))..))))).)).)).))))))..))))))........... ( -31.20) >DroEre_CAF1 61795 97 + 1 GCUCUCAAAGAAAACG--GGGA-GUGGCCAUCGAGGGG-AGGCAAAUGAAUCUGAAGAUUACGAAUGUCUGCUGCUCGGGC-CCAUCUUCGAAAAUAAGAAU ..............((--((((-..((((..((((.((-(((((..((((((....)))).))..))))).)).)))))))-)..))))))........... ( -30.40) >DroYak_CAF1 63281 99 + 1 GCUCUCCAAGAAAACC--AGGA-GGGCCCAUCAAGGGGAAGGCAAAUGAAUCUGAAGAUUACGAAUGUCUGCUGUUCGGGCCCCAUCUUCGAAAAUAAGAAU (((((((.........--.)))-)))).......(((((.(((...(((((....((((.......))))...))))).)))...)))))............ ( -25.00) >consensus GCUCUCAAAGAAAACCG_AGGA_GGGCCCAUCGAGGGG_AGGCAAAUGAAUCUGAAGAUUACGAAUGUCUGCUGUUCGGGCCCCAUCUUCGAAAAUAAGAAU ...............((((((..((((((...(((.((.(((((..((((((....)))).))..))))).)).)))))))))..))))))........... (-22.90 = -24.30 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:06 2006