Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,296,485 – 4,296,578 |
Length | 93 |
Max. P | 0.888458 |
Location | 4,296,485 – 4,296,578 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 81.53 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -15.83 |
Energy contribution | -16.38 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -2.46 |
Structure conservation index | 0.71 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4296485 93 - 20766785 AUCCCCCUCUCCACCGCCAUCGAAGACGCUGCAUUAAAAUCUUAAGCAGCAUAAUCGCUGGACUAGAACCGGCAACAAGCAAAGAUGG--GCAGC ...............((((((......(((((.((((....)))))))))......(((((.......)))))..........))).)--))... ( -24.50) >DroSec_CAF1 51715 93 - 1 ACCCCCCUCGCCAUCGCCAUCCAAGACGCUGCAUUAAAAUCUUAAGCAGCAUAAUCGCUGGACUAGAACCGGCAACAAGCAAAGAUGA--GCAGC .........((((((............(((((.((((....)))))))))......(((((.......)))))..........)))).--))... ( -24.50) >DroSim_CAF1 54979 93 - 1 AUCCCCCUUCCCAUCGCCAUCCAAGACGCUGCAUUAAAAUCUUAAGCAGCAUAAUCGCUGGACUAGAACCGGCAACAAGCAAAGAUGG--GCAGC ......((.((((((............(((((.((((....)))))))))......(((((.......)))))..........)))))--).)). ( -27.90) >DroEre_CAF1 51179 79 - 1 -------------UCUCCAUCCAAGACGCUGCAUUAAAAUCUUAAGCAGCAUAAUCGCUGGACUAGAACCGGCAACAAGCAAAGAUG---GUAGC -------------.(((((((......(((((.((((....)))))))))......(((((.......)))))..........))))---).)). ( -23.20) >DroYak_CAF1 52409 80 - 1 -------------UCUCCGUCCAAGACGCUGCAUUAAAAUCUUAAGCAGCAUAAUCGCUGGACUAGAACCGGCAACAAGCAAAGAUGG--GUAGC -------------..((((((......(((((.((((....)))))))))......(((((.......)))))..........)))))--).... ( -23.30) >DroAna_CAF1 58746 80 - 1 -----------CAUUUCAAGCCAAGAAGCUGCAUUAAAAUCUUAAGGAGCAUAAUCGCUGAACUAGAACCAACAACA----GAGAUGAAGGGAAA -----------((((((.(((......))).........(((.....(((......))).....)))..........----))))))........ ( -11.00) >consensus ___________CAUCGCCAUCCAAGACGCUGCAUUAAAAUCUUAAGCAGCAUAAUCGCUGGACUAGAACCGGCAACAAGCAAAGAUGG__GCAGC .................((((......(((((.((((....)))))))))......(((((.......)))))..........))))........ (-15.83 = -16.38 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:58 2006