Locus 1041

Sequence ID 2R_DroMel_CAF1
Location 4,282,280 – 4,282,371
Length 91
Max. P 0.596940
window1843

overview

Window 3

Location 4,282,280 – 4,282,371
Length 91
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 69.65
Mean single sequence MFE -28.55
Consensus MFE -13.66
Energy contribution -13.25
Covariance contribution -0.41
Combinations/Pair 1.35
Mean z-score -1.56
Structure conservation index 0.48
SVM decision value 0.13
SVM RNA-class probability 0.596940
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4282280 91 - 20766785
----AGAAAUCCUCA----AAUCCUGACAUCCUGGACGUAGUUGGUGUCGGCAAAGCGGCUCAUAAGCAGUAAGCUGCUUAGGAAAUGCAC---------GGGCGCAA
----.....(((...----....(((((((((((....)))..))))))))....(((..((.(((((((....))))))).))..)))..---------)))..... ( -25.90)
>DroGri_CAF1 58522 79 - 1
--ACAG----CU--UGCUG-----CCACAU------GGUGGCUGGUGUUG-AAAAGCGGCUCAUAAACAGUAAGCUGCUUAGAAAAUGCAC---------AGGCACCA
--.(((----..--..)))-----.....(------((((.((((((((.-..((((((((.((.....)).))))))))....))))).)---------)).))))) ( -28.70)
>DroSec_CAF1 43615 91 - 1
----UGAAAUCCUCA----AAUCCUGACAUCCUGGACGUAGUUGGUGUUGGCAAAGCGGCUCAUAAGCAGUAAGCUGCUUAGGAAAUGAAC---------GGGCGCAA
----...........----....(..((((((((....)))..)))))..)....(((.(((.(((((((....)))))))(........)---------)))))).. ( -22.50)
>DroEre_CAF1 43142 95 - 1
AGCCUGGCGUCCUGA----AAUCCUGACGUCCUGGACGUAGUUGGUGUCGGCAAAGUGGCUCAUAAACAGUAAGCUGCUUAGGAAAUGCAC---------GGGCGUAA
.(((((((.((((((----....((((((.((...........))))))))....(..(((.((.....)).)))..)))))))...)).)---------)))).... ( -32.10)
>DroWil_CAF1 69653 95 - 1
-------CGUCUUGUGUUG-----UCUUAUGUUGGGCGGCGUCGGUGUUG-AAAAGCGGCUCAUAAACAGUAAGCUGCUUAGAAAAUGCAACCACUAGGCAGGCUUUA
-------.((((...((((-----(((......)))))))((((((((((-..((((((((.((.....)).))))))))........))).)))).))))))).... ( -26.80)
>DroYak_CAF1 44197 93 - 1
--CCUGGCAUCCGGA----AAUCCUGACACCCUGGACGUAGUUGGUGUUGGCAAAGUGGCUCAUAAGCAGUAAGCUGCUUAGGAGAUGCAC---------GGGUGUAA
--....(((((((..----....(..((((((((....)))..)))))..)....((..(((.(((((((....))))))).)))..)).)---------)))))).. ( -35.30)
>consensus
____UG_CAUCCUGA____AAUCCUGACAUCCUGGACGUAGUUGGUGUUGGCAAAGCGGCUCAUAAACAGUAAGCUGCUUAGGAAAUGCAC_________GGGCGCAA
..........((...........((((((((............))))))))..((((((((.((.....)).))))))))....................))...... (-13.66 = -13.25 +  -0.41) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:56 2006