Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,269,342 – 4,269,463 |
Length | 121 |
Max. P | 0.636062 |
Location | 4,269,342 – 4,269,433 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 76.72 |
Mean single sequence MFE | -24.78 |
Consensus MFE | -16.73 |
Energy contribution | -17.20 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.18 |
Mean z-score | -1.08 |
Structure conservation index | 0.67 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4269342 91 - 20766785 GCUCGAUGUGGUCUCACUGUGUCCGUUCACGGAUACAUUGAGCUGAAA-GGAAGGCGCCUAAUUGGUUACAGCUCUAAUUUGAAGGAAAAAC ((((((((((....))).(((((((....))))))))))))))(.(((-..(..(((((.....)))....))..)..))).)......... ( -25.00) >DroGri_CAF1 43913 84 - 1 ACUGGAGGUGGCCUCGCUGUGUCCAUUGACAGAAACAUUCAGCUGGAAAGAGCAAUG---AAUGAGUUGGAGUUGGAGUU---A--AGAGUU ..((((.(..((...))..).))))(..((.((..(((((((((......)))..))---))))..))...))..)....---.--...... ( -19.10) >DroSec_CAF1 30737 91 - 1 GCUCGAAGUGGUCUCACUGUGUCCGUUCACGGCUACAUUGAGCUAAAA-GGAGGGCGCCUAAUAGGUUAUAGCUCUAAUUUGGAAGAAAAUC ((((((.((((((.....(((......))))))))).))))))..(((-..((((((((.....)))....)))))..)))........... ( -25.10) >DroSim_CAF1 35181 91 - 1 GCUCGAAGUGGUCUCACUGUGUCCGUUCACGGAUACAUUGAGCUGAAA-GGAAGGCGCCUAAUUGAUGAAAGCUCUAAUUUGAAGGAAAAUC ((((((((((....))))(((((((....))))))).))))))....(-((......)))................................ ( -22.80) >DroEre_CAF1 31131 91 - 1 GCUCGAAGUGGUCUCACUGUGUCCGUUCACGGAUACAUUGAGCUGAAA-GGAAUGGGCCUGGUGCAUUAAAGCGCGUAUGUGGAAGAAAGUC ((((((((((....))))(((((((....))))))).))))))....(-((......))).((((......))))................. ( -27.90) >DroYak_CAF1 31145 90 - 1 GCUCGAAGUGGUCUCACUGUGUCCGUUUACGGAUACAUUGAGCUGAAA-GGAAUGCGCCUGUUGGGUUAAAGCACUUAUUUAGAGGAAA-UU .(((.(((((..((((.((((((((....)))))))).))))(..(.(-((......))).)..).......))))).....)))....-.. ( -28.80) >consensus GCUCGAAGUGGUCUCACUGUGUCCGUUCACGGAUACAUUGAGCUGAAA_GGAAGGCGCCUAAUGGGUUAAAGCUCUAAUUUGGAGGAAAAUC ((((((((((....))))(((((((....))))))).))))))................................................. (-16.73 = -17.20 + 0.47)
Location | 4,269,370 – 4,269,463 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 79.89 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -18.23 |
Energy contribution | -19.93 |
Covariance contribution | 1.70 |
Combinations/Pair | 1.38 |
Mean z-score | -1.80 |
Structure conservation index | 0.58 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636062 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4269370 93 - 20766785 AGCUGUCGUAUUGCGUUUGGUCCGCUUUAAGCUCGAUGUGGUCUCACUGUGUCCGUUCACGGAUACAUUGAGCUGAAA-GGAAGGCGCCUAAUU ............(((((...(((..((((.((((((((((....))).(((((((....)))))))))))))))))).-))).)))))...... ( -31.80) >DroGri_CAF1 43936 91 - 1 CGCAGACGCAUUGCGUUUGGUGCGCUUCAAACUGGAGGUGGCCUCGCUGUGUCCAUUGACAGAAACAUUCAGCUGGAAAGAGCAAUG---AAUG ....((((((..(((...(((.((((((......))))))))).)))))))))............(((((((((......)))..))---)))) ( -27.90) >DroSec_CAF1 30765 93 - 1 AGCUGUCGCAUUGCGUUUGGUCCGCUUCAAGCUCGAAGUGGUCUCACUGUGUCCGUUCACGGCUACAUUGAGCUAAAA-GGAGGGCGCCUAAUA .(((.((((...)).(((((.(((((((......))))))).((((.((((.(((....))).)))).))))))))).-.)).)))........ ( -29.60) >DroSim_CAF1 35209 93 - 1 AGCUGUCGCAUUGCGUUUGGUCCGCUUCAAGCUCGAAGUGGUCUCACUGUGUCCGUUCACGGAUACAUUGAGCUGAAA-GGAAGGCGCCUAAUU .((....))...(((((...(((..((((.((((((((((....))))(((((((....))))))).)))))))))).-))).)))))...... ( -35.50) >DroYak_CAF1 31172 93 - 1 AGCUGUCGCAUUGCGUUUGGUCCGCUUCAAGCUCGAAGUGGUCUCACUGUGUCCGUUUACGGAUACAUUGAGCUGAAA-GGAAUGCGCCUGUUG (((.(.((((((.(.((..(.(((((((......))))))).((((.((((((((....)))))))).)))))..)).-).)))))).).))). ( -38.80) >DroAna_CAF1 30748 87 - 1 AGUCGUGGGAUUGCGUUUGGUCCGUUUUAGGCUCGAAGUGGUCUCACUAUGUCCAUUUACAGAGACAUUCAGCUAGAG-GGGAU------UACA (((((((((((..(.((((..((......))..)))))..))))))).((((((.......).)))))..........-..)))------)... ( -24.00) >consensus AGCUGUCGCAUUGCGUUUGGUCCGCUUCAAGCUCGAAGUGGUCUCACUGUGUCCGUUCACGGAUACAUUGAGCUGAAA_GGAAGGCGCCUAAUA ............(((((...(((..(((.(((((((((((....))))(((((((....))))))).))))))))))..))).)))))...... (-18.23 = -19.93 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:54 2006