| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,249,551 – 4,249,647 |
| Length | 96 |
| Max. P | 0.558486 |
| Location | 4,249,551 – 4,249,647 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 87.29 |
| Mean single sequence MFE | -22.53 |
| Consensus MFE | -15.43 |
| Energy contribution | -17.05 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4249551 96 + 20766785 ACUUGUAUCUGCUUGCCUCUUGCUGGUUGAAUAUACUGAAUAUUUUGUACAUACAUCUAUA--UGUAUAUCUGUGUGUCUCUGUAGGUGCCUUGGUAA (((.((((((((..(((.......))).((((((((.((......((((((((......))--)))))))).)))))).)).))))))))...))).. ( -21.50) >DroSec_CAF1 11138 96 + 1 ACUUGUAUCUGCUUGCCUCUUGCUGGUAAAAUAUACUGAAUAUUUUGUACAUACAUCUACA--UGUAUAUCAGUGUGUCUCUGUAGGUGCCUUGGUAA (((.(((((((((((((.......))))).(((((((((((((..((((........))))--.)))).)))))))))....))))))))...))).. ( -26.50) >DroEre_CAF1 11329 97 + 1 ACUUGUAUCUGGUUGCCU-UUGCUGGUUAAAUAUACUGAAUGUUUUGUACAUAUGUGUACCAGUAUAUGUCGGUGUGUCUCUGUAGGUGCCUUGGUAA (((.(((((((...(((.-.....)))...(((((((((((((...(((((....)))))....)))).))))))))).....)))))))...))).. ( -22.90) >DroYak_CAF1 11307 92 + 1 ACUUGUAUCUGGCUGUCUCUUGCUGCUUAAAUAUACUGAAUAUUUUGUACAUAUAUA------CGUAUGUCGGUGUGUCUCUGUAGGUGCCUUGGUAA .....((((.(((.....(((((.......(((((((((.(((..((((......))------)).))))))))))))....))))).)))..)))). ( -19.20) >consensus ACUUGUAUCUGCUUGCCUCUUGCUGGUUAAAUAUACUGAAUAUUUUGUACAUACAUCUACA__UGUAUAUCGGUGUGUCUCUGUAGGUGCCUUGGUAA (((.((((((((..(((.......)))...(((((((((((((..((((........))))...)))).)))))))))....))))))))...))).. (-15.43 = -17.05 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:51 2006