| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,244,364 – 4,244,456 |
| Length | 92 |
| Max. P | 0.885716 |
| Location | 4,244,364 – 4,244,456 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 77.84 |
| Mean single sequence MFE | -30.81 |
| Consensus MFE | -20.89 |
| Energy contribution | -20.87 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.885716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4244364 92 + 20766785 GAGUGUGGUCUGGGCAUGACAAGCCUGCAGAAGCAGGUCCAUGGCCUCCAUGGCAAUUUCGGCUAGUCUAAACAAG----AGUAAA--GAUUAACA--------AG ..((.(((.((((.(.......((((((....))))))((((((...)))))).......).)))).))).))...----......--........--------.. ( -26.80) >DroVir_CAF1 8514 92 + 1 GAGGGUUGUCUGGGCGUGGCAAGCCUGCAGCAGCAGGUCCAUAGCCUCCAUGGCAAUCUCGGCCAGCCUGUGAA------UGCAA-UCGGUUAAUGAUA------- ..((((((.(((((.((((...((((((....)))))))))).(((.....)))...))))).)))))).....------....(-(((.....)))).------- ( -32.30) >DroSec_CAF1 5916 92 + 1 GAGUGUGGUCUGGGCAUGACAAGCCUGCAGCAGCAGGUCCAUGGCCUCCAUGGCAAUUUCAGCUAGUCUAAACAAG----AGCAAC--GAUUAACA--------AG ..((.(((.((((.(.(((...((((((....))))))((((((...)))))).....)))))))).))).))...----......--........--------.. ( -25.30) >DroEre_CAF1 5952 96 + 1 GAGAGUGGUCUGGGCAUGACAAGCCUGCAGAAGCAGGUCCAUGGCCUCCAUGGCUAUCUCGGCUAGUCUGAACAAAAACAAGCAAA--GAUUAGCG--------AG ((((.(((((.((.((((....((((((....)))))).)))).)).....))))))))).((((((((................)--))))))).--------.. ( -35.79) >DroYak_CAF1 5919 92 + 1 AAGUGUGGUCUGGGCAUGACAAGCCUGAAGAAGCAGGUCCAUGGCCUCCAUGGCAAUCUCGGCUAGUCUGAACACA----AACAAA--GAUUAGCG--------AG ....((((...((.((((....(((((......))))).)))).)).))))......((((.(((((((.......----.....)--))))))))--------)) ( -29.70) >DroAna_CAF1 5747 100 + 1 AAGAGUGGUCUGGGCAUGGCAGGCCUGAAGCAGCAGGUCCAUGGCCUCCAUGGCGAUCUCAGCCAGCCUGUGGAAG----AACAGG--AUUUAAUACAGUUCAAAG ..((((((.(((((.((.((.((((((......))))))(((((...))))))).)))))))))).(((((.....----.)))))--...........))).... ( -35.00) >consensus GAGUGUGGUCUGGGCAUGACAAGCCUGCAGAAGCAGGUCCAUGGCCUCCAUGGCAAUCUCGGCUAGUCUGAACAAG____AGCAAA__GAUUAACA________AG .((..(((.(((((((((....((((((....)))))).))))(((.....)))...))))))))..))..................................... (-20.89 = -20.87 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:50 2006