Locus 1035

Sequence ID 2R_DroMel_CAF1
Location 4,242,294 – 4,242,414
Length 120
Max. P 0.607136
window1836

overview

Window 6

Location 4,242,294 – 4,242,414
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.67
Mean single sequence MFE -44.93
Consensus MFE -30.73
Energy contribution -32.90
Covariance contribution 2.17
Combinations/Pair 1.36
Mean z-score -1.38
Structure conservation index 0.68
SVM decision value 0.15
SVM RNA-class probability 0.607136
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4242294 120 + 20766785
CCGGCUAGCUUCUUGGGCUCGAGCAGUGGGGGAAGGAAAUGGCUGGCCUCCUCGCGCCGUGCGUCCACUAUCUUUUGAGCAUACUCCAGAAGGUUGUUGAUGCCACUAACACGCGAGAUU
..((((((((((((...((((.....))))...))))...))))))))..((((((..(((((((.((.((((((((((....)).)))))))).)).)))).))).....))))))... ( -43.50)
>DroPse_CAF1 3797 120 + 1
GUUGCGACCUUCUUGGACUCCAGCAGCGGCGGAAGAAAGUAGGUGGCCUCCUCGCGUCGCGCAUCGACAAUCUUCUGGGCAUACUCCAGCAGAUUGUUGAUGCCACUAACUCGCGAGAUC
...((.((((.(((....(((.((....)))))...))).)))).))...((((((....(((((((((((((.(((((.....))))).)))))))))))))........))))))... ( -50.30)
>DroGri_CAF1 8053 120 + 1
CUGGACACCUUCUUUGGGUCGAGCAGUGGCGGCAAAUAGUAGGUGGCUUCCUCGCGUCGCGCCUCAAUUAUCUUCUGGGCGUACUCGAGCAGACUGUUGAUGCCACUCACGCGCGAGAUG
((.(((.((......))))).)).(((((((...((((((..((((...))(((.((.((((((..(......)..)))))))).)))))..))))))..)))))))....(....)... ( -37.60)
>DroMoj_CAF1 3433 120 + 1
GUGACCACCUUCUUGGGCUCCAACAGCGGCGGCAGAUAGUAGAUGGCCUCCUCGCGUCGCGCCUCAAUAAUCUUUUGUGCAUACUCCAGCAGAUUGUUGAUGCCGCUGACGCGCGAGAUG
..........(((((.((.....((((((((((.(((.((.((.((...)))))))))..)))((((((((((.(((.........))).)))))))))).)))))))..)).))))).. ( -40.20)
>DroAna_CAF1 3710 120 + 1
CCGGACAUUUUCUUGGGCUCCAGUAGGGGCGGUAGGAAGUGGGUGGCUUCCUCGCGACGCGCGUCCACAAUUUUCUGGGCGUAGUCCAGAAGGUUGUUAAUUCCACUUACUCGUGAGAUA
..((((...((((((.(((((....)))))..))))))(((.((.((......)).)).)))))))((((((((((((((...))))))))))))))..((..(((......)))..)). ( -47.70)
>DroPer_CAF1 7936 120 + 1
GUUGCGACCUUCUUGGACUCCAGCAGCGGCGGAAGAAAGUAGGUGGCCUCCUCGCGUCGCGCAUCGACAAUCUUCUGGGCAUACUCCAGCAGAUUGUUGAUGCCACUAACUCGCGAGAUC
...((.((((.(((....(((.((....)))))...))).)))).))...((((((....(((((((((((((.(((((.....))))).)))))))))))))........))))))... ( -50.30)
>consensus
CUGGCCACCUUCUUGGGCUCCAGCAGCGGCGGAAGAAAGUAGGUGGCCUCCUCGCGUCGCGCAUCAACAAUCUUCUGGGCAUACUCCAGCAGAUUGUUGAUGCCACUAACUCGCGAGAUC
..((((((((.(((...((...((....))...)).))).))))))))..((((((....(((((((((((((.(((((.....))))).)))))))))))))........))))))... (-30.73 = -32.90 +   2.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:49 2006